Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0677 ATGGGGAAGAAGAAAAAGAGGGTTTCTTCGAAGGTATGGTGTTATTACTGCGATCGCGAATTTGATGATGAGAAGATATTGGTTCAGCATCAGAAAGCGAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTTTCCACCGCTGGCGGCATGGCCATCCATGTCCTCCAGGTCCACAAGGAATCTGTCACCATGGTGCCCAATGCAAAACCTGGCAGAGAATCCACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATGTCTTGGCTTCTCATTATGGAGAGGATGATGACGAGGTTCCGTCAAAGGCAGCCAAGGTGGTTATCCCATCAACTCCACTTGTACGTGGAATGGTGCCACCTCCCTTGGGTACAGGTTATCCTCCTCGACCACCTTTTGGCACCGTGCCACCAATTTATAATCCAGCTGTACATGTTCCTCCAAATGGTTGGGCAGTTCCACCTCGACCTCAGCCATGGTATCCACAACCTCCATCTGTTTCTATTCCCCCTCGTGCCCCATATCCACAGCAGCCATTATTTCCTGTGCAGAATGTGAGGCCACCATTACCAACAACTGTTCCTCCTGCACTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTACAACTTCTGTCCCAGTTGTACAACCTTTGTTTCCAGTTGTTGGTAGTAACAATACAACGACTCAAGGTTCATTTTCTGTTGCCCCTGTAGCTTCAAGTGTTCCCTCGATAACACCTCCACTATCTATGAATGTCCCTGTTGATGCACGTTTTAGTGCCATCTCTTCTCTGACAAATAGCTATCAGGCTATAGGGGTTGCAGGTGAGGCAGCAAGTAACTCCCACTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCTCCAGTAATTGCAAACAAAGCTCCTGTTTCCCAGCCTGCCACTAATGAAGTCTACTTAGTTTGGGATGATGAGCCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCTATTGATGCAGCCATAGATAAGAGGATACTTGAAAGCAGGCTCGCAGGTCGTATGGCATTTTAG 1119 0.4718 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTMVPNAKPGRESTDIEIYGMQGIPPDVLASHYGEDDDEVPSKAAKVVIPSTPLVRGMVPPPLGTGYPPRPPFGTVPPIYNPAVHVPPNGWAVPPRPQPWYPQPPSVSIPPRAPYPQQPLFPVQNVRPPLPTTVPPALQTQITPPGLPTSTTSVPVVQPLFPVVGSNNTTTQGSFSVAPVASSVPSITPPLSMNVPVDARFSAISSLTNSYQAIGVAGEAASNSHSYASGPNTGGPSIGPPPVIANKAPVSQPATNEVYLVWDDEPMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0677 372 MobiDBLite consensus disorder prediction 285 312 - -
Lal23g0677 372 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lal23g0677 372 Gene3D Classic Zinc Finger 1 65 - -
Lal23g0677 372 SMART c2h2final6 12 35 IPR013087 -
Lal23g0677 372 SMART c2h2final6 36 59 IPR013087 -
Lal23g0677 372 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 372 - -
Lal23g0677 372 PANTHER ZINC FINGER PROTEIN 207 1 372 - -
Lal23g0677 372 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Lal23g0677 372 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0677 Lal-Chr23 9424424 9427876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0677 1 352 C2H2 Transcription Factor Family AT1G30970 61.725 3.06e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal23g0677 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0677 - - gmx:100819009 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0965 16 6405108 6409310 Lal23g0677 23 9424424 9427876 LSH