Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0660 ATGGCTGAACGTGGTGGCGGAGATCGTGGAGGCTTCGGCCGAGGATTCGGCGAAAGAGGCCGTGGAGGCCGCGGTGACAGAGGCCGCGGTGGCCGCCGCAGAGGTCCCCGTCGCGAAGAAGAAGAAAAATGGGTCCCAGTCACCAAACTAGGCCGTCTCGTAAAAGACGGTAAAATCCGTTCCCTCGAACAGATCTACCTTCACTCTCTCCCAATCAAAGAACACCAAATCATCGATACCCTTGTGGGACCCTCTCTCAAAGATGAAGTCATGAAAATCATGCCGGTTCAGAAACAAACCCGGGCTGGTCAACGAACCCGGTTCAAGGCCTTTGTTGTTGTTGGTGACAATAACGGTCACGTTGGGCTCGGTGTTAAGTGCAGCAAGGAGGTTGCGACTGCGATTCGTGGCGCGATTATTCTCGCGAAGCTTTCGGTTATTCCAGTGAGGAGAGGTTATTGGGGTAACAAAATTGGAAAGCCTCACACTGTTCCTTGCAAGGTTACTGGTAAGTGTGGTTCAGTTACTGTGAGGATGGTTCCTGCGCCTCGAGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTGCTTCAATTTGCTGGAATTGATGATGTTTTTACTTCCTCTAGGGGTTCTACTAAGACTCTTGGAAATTTCGTCAAGGCCACCTTTGATTGTTTGCTGAAAACCTATGGGTTCCTTACACCGGAGTTCTGGAAGGAGACTCGCTTCTCAAAATCTCCATTCCAAGAGTATACAGATCTATTGGCAAGGCCTACAACAAAGGCTTTGATCCTTGAGCAGGAGGATAAGGTTGCTGAAGCTTGA 831 0.5006 MAERGGGDRGGFGRGFGERGRGGRGDRGRGGRRRGPRREEEEKWVPVTKLGRLVKDGKIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLARPTTKALILEQEDKVAEA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0660 276 ProSitePatterns Ribosomal protein S5 signature. 103 135 IPR018192 -
Lal23g0660 276 PANTHER RIBOSOMAL S SUBUNIT 1 270 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal23g0660 276 SUPERFAMILY Ribosomal protein S5 domain 2-like 162 242 IPR020568 -
Lal23g0660 276 ProSiteProfiles S5 double stranded RNA-binding domain profile. 86 149 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal23g0660 276 MobiDBLite consensus disorder prediction 1 42 - -
Lal23g0660 276 Gene3D - 43 148 - -
Lal23g0660 276 TIGRFAM uS5_euk_arch: ribosomal protein uS5 39 246 IPR005711 GO:0003735|GO:0006412|GO:0015935
Lal23g0660 276 Pfam Ribosomal protein S5, C-terminal domain 170 242 IPR005324 GO:0003735|GO:0005840|GO:0006412
Lal23g0660 276 Pfam Ribosomal protein S5, N-terminal domain 86 150 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lal23g0660 276 Gene3D - 149 242 IPR014721 -
Lal23g0660 276 SUPERFAMILY dsRNA-binding domain-like 82 151 - -
Lal23g0660 276 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0660 Lal-Chr23 9316574 9318440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0660 40 260 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 92.308 1.91e-152 425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0981 16 6522262 6530592 Lal23g0660 23 9316574 9318440 LSH
Lal15g0958 15 7471230 7473096 Lal23g0660 23 9316574 9318440 LSH