Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0643 ATGATGTTCAAACTTGCATGCTTTTTTTCTTCTTTGATTATATTATTCACCAATTCTTCTAGCAGCAAAAACATTTCATCCTCAACTTGTCCCACTTACCATTGCACCAATGGACCTAACATCACTTACCCTTTCTGGTTATCCCAAGGTACCCCTCCTGACCAATACTGTGGTTACCCTGAATTTGGTCTTATATGTTCAGACCATGGTTACCCTATTTTCTCACTACCACCAGGATTATACTACTATTTTAAAGATATAGATTATATAAGCCATAGTATTAAACTAGTTGATGCTGATACTGAAAACCAAACATGTCCAAGAGCACTTCACAGTGTTCCCTTAGGAAACCTACCACTTTCTCATTCTCATTTGAACTTGAACCTTAGCTTTTATTACAACTGCAGTGATTACACTTCTGGGGTACCAGTTGTGAAGTGTCTTAGTTCTGGTGTGAATGAGTCTTTTGTGTTTGTGTTGGGGGATGAGCCTGAGAGTTTTGACTGGTCAAAGAGTTGTGAGGAAAATGTTCTGGTTCCAGTGTTGAGGGATGAGATTATAGATGTTGACAACTTGGTCAATGAGTTTTCTGGGGCTATGAAAGAAGGGTTTGTGCTTGATTGGCACACTTCTACCAGTTGTGCTGATTGTGAGGCTAGTGATGGACTTTGTGGATACAATAACAATAGGACTGAGTTGTTGTGCTTTTGCAAGGATGGAAGTGTAAGAAGCAATAAATGTGAAGGGGAAAGCAGCACCAGTTTATCAAGACTAAGTATAGGTTTAATAGCAGGAGGAATTGGAGCACTACTGATAATATGTATTACAATTTTCAGTTTCAGACATAAATTATCACCAATTGTGCCAGAAACTTGGAAGACAAAAAAGGTTGATAAAGATATTGAGGCCTTCATAAGAAATAATGGACCACTAGCCATAAAAAGGTACTCTTATTCAGATATCAAGAAAATGACAAATTCTTTTGAATCCAAACTGGGACAAGGTGGCTATGGTCAAGTATATAAAGGTAATTTAAACAAAAATGTTCCTGTGGCTGTGAAGGTACTGAATGCTTCCAAAGGGAAAGGAGAAGAATTTATCAATGAGGTTATGAGCATAAGTAGAACATCACATGTAAATGTGGTTAATCTCCTTGGCTTTTGTGTTGACAGCCAGAAAAATGCTCTTATCTACGAATTCATGCCGAATGGATCACTTGAAAAGTTCATAAACAACAAGGACTTTGAAACCAATCCACCTTTGAGTTGGAAAAGATTACACCAAATTGCAGAAGGGATAGCTAAAGGGCTAGAGTACTTGCATAGAGGCTGCAACACTCGGATTTTACATTTTGACATAAAACCAAGCAACATTCTCTTGGACAAAAACTTCTGCCCGAAAATCTCGGATTTCGGGTTGGCTAAGCTATGCTCAAAAACACAAAGTATCATCTCTATGTTAGATGCAAGAGGGACAATAGGCTATATAGCTCCAGAAGTATGGAACAAAAACTTTGGAGGAGTGTCACATAAGTCTGATGTGTATAGCTATGGAATGCTGATTTTGGAAATGGTTGGAGGAAAACAGAACATAAGTACTGAAACAACTCATTCTAGTGAGACATATTTTCCTCATTGGATATACAAGCATATTGAGGTTGGAAGCAATGCAGCATGGTATGATTATGATATGACCACAGAGGAAAATGAAATTGTAAAGAAAATGATCATGGTAGGATTATGGTGCATTCAGACAAACCCATATGAGAGGCCTCCAATAAGTAGGGTGATTGAAATGTTAGAAGGAAACATAGAACAGTTGCAAATTCCACCAAAGCCATTCATATTTTCTCCTACAAGACCATCTTGCATTACTTGTAATAGCTGTGATTAA 1893 0.3772 MMFKLACFFSSLIILFTNSSSSKNISSSTCPTYHCTNGPNITYPFWLSQGTPPDQYCGYPEFGLICSDHGYPIFSLPPGLYYYFKDIDYISHSIKLVDADTENQTCPRALHSVPLGNLPLSHSHLNLNLSFYYNCSDYTSGVPVVKCLSSGVNESFVFVLGDEPESFDWSKSCEENVLVPVLRDEIIDVDNLVNEFSGAMKEGFVLDWHTSTSCADCEASDGLCGYNNNRTELLCFCKDGSVRSNKCEGESSTSLSRLSIGLIAGGIGALLIICITIFSFRHKLSPIVPETWKTKKVDKDIEAFIRNNGPLAIKRYSYSDIKKMTNSFESKLGQGGYGQVYKGNLNKNVPVAVKVLNASKGKGEEFINEVMSISRTSHVNVVNLLGFCVDSQKNALIYEFMPNGSLEKFINNKDFETNPPLSWKRLHQIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGLAKLCSKTQSIISMLDARGTIGYIAPEVWNKNFGGVSHKSDVYSYGMLILEMVGGKQNISTETTHSSETYFPHWIYKHIEVGSNAAWYDYDMTTEENEIVKKMIMVGLWCIQTNPYERPPISRVIEMLEGNIEQLQIPPKPFIFSPTRPSCITCNSCD 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0643 630 ProSiteProfiles Protein kinase domain profile. 326 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0643 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Lal23g0643 630 PANTHER - 12 620 - -
Lal23g0643 630 Pfam Wall-associated receptor kinase galacturonan-binding 30 98 IPR025287 GO:0030247
Lal23g0643 630 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Lal23g0643 630 PANTHER RUST RESISTANCE KINASE LR10-RELATED 12 620 IPR045874 GO:0004672
Lal23g0643 630 Pfam Protein tyrosine and serine/threonine kinase 328 600 IPR001245 GO:0004672|GO:0006468
Lal23g0643 630 Gene3D Phosphorylase Kinase; domain 1 302 400 - -
Lal23g0643 630 Gene3D Transferase(Phosphotransferase) domain 1 401 609 - -
Lal23g0643 630 SUPERFAMILY Protein kinase-like (PK-like) 309 601 IPR011009 -
Lal23g0643 630 Pfam Wall-associated receptor kinase C-terminal 151 240 IPR032872 -
Lal23g0643 630 SMART serkin_6 326 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0643 Lal-Chr23 9144782 9149646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0643 31 621 Receptor kinase-like Gene Family AT5G38260 40.589 1.26e-146 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lal23g0643 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0643 - - gmx:100781977 897.116