Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0640 ATGTCCACTTCAAAGAGCCTTAGCAATTGTAGTGAAGATGATAATGAACTTAGAAGAGGACCTTGGACTCTTGAAGAAGATAAGTTGCTTGTTCAGTACATTTCTGATCATGGTGAAGGGAGATGGAATTTACTTGCTAAACGTTCAGGTTTAAAGAGAATAGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCTGATGTAAAACGAGGAAATTTAACCTTTGAAGAACAGCTTTTGATTCTTGAACTCCACTCAAGGTGGGGAAACAGGTGGTCAAAAATTGCACAACATTTGCCGGGTAGGACAGACAATGAAATAAAAAACTATTGGAGGACCAGGATTCAAAAACAAGCAAGACATTTAAAAATTGACACATATAGCATAGAATTTCAAGAACTTGTTAGGCATTTCTGGATACCAAAGTTGCTTCAGAAAGCAAAAGAGTCATCTCCATCCATGTCAATCCAAAACCAAACAATTCCTATGCCACTTGGTAGTGGTCCTCAATATTCAGCCATAGCAACACAAATCCCTTGGCAGGGACCTTGTATCAATGAAGCAACTACAGGTCCTAATTATTTGGATCAACATGATCAGAACTCTGATTCTGAGCACAACAATGGTTCATGCATCTCATTTTCTGAATCAGTAAATATCTCAAAAGTGCCTAACCTTTTGGGATACACAACAAATCAATTTTATGGCTTAGGTACCAATGACTTTGGCACACTCACTTATGATGGCTATGATGTAAATAACAATGCATATGAGATGGATGCCTTCAACATGGCAACTACAATTGGTGATTGCCACATGGTAGAAAGCAATTGGGTAAACAAAGATTTTCTTGCATGTAGAACATGGAACATGGATGAATTATTTTAA 894 0.3714 MSTSKSLSNCSEDDNELRRGPWTLEEDKLLVQYISDHGEGRWNLLAKRSGLKRIGKSCRLRWLNYLKPDVKRGNLTFEEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTYSIEFQELVRHFWIPKLLQKAKESSPSMSIQNQTIPMPLGSGPQYSAIATQIPWQGPCINEATTGPNYLDQHDQNSDSEHNNGSCISFSESVNISKVPNLLGYTTNQFYGLGTNDFGTLTYDGYDVNNNAYEMDAFNMATTIGDCHMVESNWVNKDFLACRTWNMDELF 297
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0640 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
Lal23g0640 297 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Lal23g0640 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Lal23g0640 297 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 295 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal23g0640 297 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Lal23g0640 297 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Lal23g0640 297 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Lal23g0640 297 CDD SANT 76 115 IPR001005 -
Lal23g0640 297 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Lal23g0640 297 SMART sant 71 119 IPR001005 -
Lal23g0640 297 SMART sant 18 68 IPR001005 -
Lal23g0640 297 Gene3D - 19 71 - -
Lal23g0640 297 Gene3D - 76 118 - -
Lal23g0640 297 PANTHER OS01G0128000 PROTEIN 8 295 - -
Lal23g0640 297 CDD SANT 21 66 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal23g0640 Lal-Chr23 9135162 9137027 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0640 14 203 MYB Transcription Factor Family AT1G68320 55.556 1.45e-73 226
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal23g0640 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0640 K09422 - gmx:778045 467.233
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0640 23 9135162 9137027 Lal23g0640 23 9135162 9137027 ECH
Lal16g1010 16 6718001 6719884 Lal23g0640 23 9135162 9137027 LSH