Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0637 ATGATAAGAGACATGAAAGCTGCAAGTGCCTTGGCTGCTAAGACTGCAAGAGCTTGTCATAGCTGCCTAAGGAGAAGAGCAAGGTGGTTTTGTGCTGCTGATGATGCTTTCCTATGCCATGGTTGTGACTCTTTGGTTCACTCAGCAAACCAACTAGCCAATAGGCATGAAAGAGTTAAGCTTCAAACTGCATCAAACAAGGTAGCAACAAAAGCACAAGCATGGCACAGTGGCTTCACACGCAAGGCAAGAACCCCACGTAACAACAAGCACTTGGTACTTCAACAAAGACTCAAAGACAAAGTGCTTTTCAACAACAGTAGTACTAATATTCTTCCTATTGTGCCTGAACTTGGAGGTGAAGAAGAGCAAGTGTTTGATGATGAAGAGAGTGAGGAACAGATGCTATGCCGCGTGCCAGTGTTTGAACCATTTAACTCTGCTGATTTTTGCAATATATACAACGATGAAGTGAGTATTAAAAATGATGCTGCTAATGATGAAACAGCATGCGACTTGGACAGTTTTTCTGAGTTTCTTGCTTCAGATATGAATCTTGCAGACTTTGCTGCTGATGTTGAAAGCTTACTTGGAACATCAGAAGTGTTTGATTGTAAAGAAGAGGATGAAATGGATGGAGTGAGAGTAAAAGGTGCAATGGTGAAGGTTAAGGATGAAGAACTTGATGAAGACACAGCATGTCATCTTGACTCAGTTTTTGACATGACAAATGAGGCCTTTGATTGGAACATTGATTCAGTGCTGTCAACAGCACCAGCAGCTACACTAGAAGAGGAGGAAAAGGTGGTGGTGTCTGTGGCAGTGCCAGCCATTAAAGTGGAAACAAAGAGGGACATAAATTTGAGACTAAAGTTAAACTATGAGGAAGTTATTGCTACTTGGGCTAGTCAAGGTTGTCCATGGACAACAGGAAACCCTCCTAAGTTCAACTCTGATGATTGCTGGCTTGACTTCTTGGGTTCATCAAGTGGTGGAGATGCTCAATGCTCTTCTTATGGAGAAGTTAGAAGAAGCTTAAGGGGACACCATGTAGATGGGGAAAGAGAAGCAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAGAGAAGAACTCGTTTGTTTTCAAAGAAGATAAGATATGAAGTGAGAAAGTTGAATGCAGAAAAGAGACCAAGAATGAAAGGTCGTTTTGTGAAGAGGGCATGCTTTTTTGGTGGAGCCAATAATGCTTTTGAGCCTTACCACTGA 1248 0.4191 MIRDMKAASALAAKTARACHSCLRRRARWFCAADDAFLCHGCDSLVHSANQLANRHERVKLQTASNKVATKAQAWHSGFTRKARTPRNNKHLVLQQRLKDKVLFNNSSTNILPIVPELGGEEEQVFDDEESEEQMLCRVPVFEPFNSADFCNIYNDEVSIKNDAANDETACDLDSFSEFLASDMNLADFAADVESLLGTSEVFDCKEEDEMDGVRVKGAMVKVKDEELDEDTACHLDSVFDMTNEAFDWNIDSVLSTAPAATLEEEEKVVVSVAVPAIKVETKRDINLRLKLNYEEVIATWASQGCPWTTGNPPKFNSDDCWLDFLGSSSGGDAQCSSYGEVRRSLRGHHVDGEREAREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRACFFGGANNAFEPYH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0637 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 406 - -
Lal23g0637 415 CDD Bbox1_BBX-like 18 59 - -
Lal23g0637 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Lal23g0637 415 Pfam B-box zinc finger 17 61 IPR000315 GO:0008270
Lal23g0637 415 Pfam CCT motif 358 400 IPR010402 GO:0005515
Lal23g0637 415 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lal23g0637 415 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 406 - -
Lal23g0637 415 SMART bboxneu5 14 61 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0637 Lal-Chr23 9108944 9111405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0637 8 400 C2C2-CO-like Transcription Factor Family AT1G25440 42.824 9.63e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal23g0637 zf-B_box 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0637 - - adu:107478728 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1016 16 6745663 6750661 Lal23g0637 23 9108944 9111405 LSH