Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0632 ATGGATTTAGAAGAGAAATTCCTTGCTAAAGTTTCTAGCATGCAAAGCCTTTCTTCCAGTGAGCAGAGTACTCCAGAAAAAAATGGCCATTCAGATGATGCTTCAAAAAGTTCAGAACTCTTTCCAGAGTTCCTGAAGCCTGGTCCAAAGAAGGAACTTATTCGAACATGCTTTGGTAAGGACAAAAAGAAAGTTTCATCAAAAGTCAGGATGTCTGACTCTAAGTCAACTGGTAAGGTAATTAACAAACAAGAATCCAAGAAAGTTTCCAGTCTCAGCCATCAGCCTCCTAGGAAGCAACACCGCAAGGGTGAAAACCCCACACGGCTGATATCTACTTCTGATCGGTCTTCTGATTTTGGACATTCAAACTCTTGGATCTGTAAAAATGCTGCTTGTAGGGCAGTTCTATCTATAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATATACTCAAGGGGACTCCTGTGGGCTGTCTTGTCATATCGAGTGTGCCCTCCAACATGAAAAAGTTGGAGTTATTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCATGTGGTAAAGTTACAGGGATACTTGGATGCTGGAAAAAGCAACTAAATATAGCGAAAGATGCCCGGCGTGTAGATGTACTCAGTTACAGGATATATTTGAGCTACAGGCTACTGGACGGAACATCAAAATTTAAAGAATTGCATCAAATTGTACAAGAGGCTAAGGCTAAACTGGAGACAGAAGTTGGTCCAGTTAATGGTGTTTCTGCGAAGATGGTACGAGGCATTGTTAGCAGACTTTCTGTTTCCAGTGACGTGCAGAAACTATGCTCTCTTGCCATTGAGAAAGCTGATAGCTGGCTGGCCACTGTTCCCAATGTAAATCCAGATTCCACAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTTTTTTTGAAGAGGTAACAGCTTCCTCAGTGAAAATCATTTTAATTGAAATATCAAATGTATCTTCTGAGGACATTAAGGGATACAAGCTCTGGTATTACAAGAAAGGGGAGGAGTTGCACACAAAAGAACCCGTTTCTGTGTTCCCCAAATCTCAGAGGAGGATTTTGATATCCAATCTTCAGCCTTGCACTGAATATACTTTTCGGATAATATCTTACACTGATTCGGGTGACCTAGGCCATTCTGAGGCTAAGTGTTTCACCAAGAGCATCGAGATAATTCAAAAGAATCCCTCTTCGTCTGTTGTTAAGAATCAAAGAAAAGAGAATATTCAAACTGGAGGCAGTTCTTCTGGCTCCAAAATGGAGCTCCATCCAATAATGGAGGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAGTTTTGCGTTTTGCTTGGGCTCAAGAGCAAGGTTACTTTGAGAAGTTTTGTTTTGCTGATAAGAAAATTTGCCATGGACAAAATGAGATGGTCAAGCCAAAAATTCCGGAAGAGAAGTTGCCTTCAGTTTCACGAGACCTTGATTTAAATGTTGCTTCAGTTCCTGATTTAAATGAAGAGTTGACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGCTGTACTTCGCTGCAGGCAGTTGAGGCAGATGATGATGCTGCTTCTCGCGATATAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGATGACTCACAAACCTGGACCCGTGGTCCTCCCAGAGAAGTGCCAGCTGTTGACTCTCGTGTAGATGTAGGCAGGAAAAGGATAGCAAGCAGAAATGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGCTCTCCTTTATGCAGATCTGATGGTTCAATCTTTTTGAATGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTGAGGTCGACAGAACAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATCGATGATCCTAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATTATATCCAACAAGAAGCCAAGAAATGGATTCTGTAATAAGGCTGGGGCATCGAATTAA 2163 0.4138 MDLEEKFLAKVSSMQSLSSSEQSTPEKNGHSDDASKSSELFPEFLKPGPKKELIRTCFGKDKKKVSSKVRMSDSKSTGKVINKQESKKVSSLSHQPPRKQHRKGENPTRLISTSDRSSDFGHSNSWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSEYTQGDSCGLSCHIECALQHEKVGVIDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLSYRIYLSYRLLDGTSKFKELHQIVQEAKAKLETEVGPVNGVSAKMVRGIVSRLSVSSDVQKLCSLAIEKADSWLATVPNVNPDSTEGSLPAACKFFFEEVTASSVKIILIEISNVSSEDIKGYKLWYYKKGEELHTKEPVSVFPKSQRRILISNLQPCTEYTFRIISYTDSGDLGHSEAKCFTKSIEIIQKNPSSSVVKNQRKENIQTGGSSSGSKMELHPIMEDSGFKVRDLGKVLRFAWAQEQGYFEKFCFADKKICHGQNEMVKPKIPEEKLPSVSRDLDLNVASVPDLNEELTPPFESSRDEDNGCTSLQAVEADDDAASRDIEKNGLARSHGSDDSQTWTRGPPREVPAVDSRVDVGRKRIASRNEETHDCDSTLINGSPLCRSDGSIFLNENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKKPRNGFCNKAGASN 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0632 720 MobiDBLite consensus disorder prediction 61 117 - -
Lal23g0632 720 MobiDBLite consensus disorder prediction 568 592 - -
Lal23g0632 720 MobiDBLite consensus disorder prediction 26 48 - -
Lal23g0632 720 Gene3D Immunoglobulins 314 417 IPR013783 -
Lal23g0632 720 MobiDBLite consensus disorder prediction 1 48 - -
Lal23g0632 720 PANTHER VIN3-LIKE PROTEIN 1 55 715 - -
Lal23g0632 720 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Lal23g0632 720 Pfam Fibronectin type III domain 335 413 IPR003961 GO:0005515
Lal23g0632 720 MobiDBLite consensus disorder prediction 435 453 - -
Lal23g0632 720 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 715 IPR044514 GO:0010048|GO:0040029
Lal23g0632 720 MobiDBLite consensus disorder prediction 11 25 - -
Lal23g0632 720 MobiDBLite consensus disorder prediction 435 456 - -
Lal23g0632 720 SUPERFAMILY Fibronectin type III 336 416 IPR036116 GO:0005515
Lal23g0632 720 CDD FN3 357 411 IPR003961 GO:0005515
Lal23g0632 720 MobiDBLite consensus disorder prediction 71 93 - -
Lal23g0632 720 CDD PHD_VIN3_plant 148 212 - -
Lal23g0632 720 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0632 Lal-Chr23 9056035 9065639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0632 124 711 PHD Gene Family AT3G24440 49.003 2.64e-177 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0632 - - gmx:100780157 1194.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0632 23 9056035 9065639 Lal23g0632 23 9056035 9065639 ECH
Lal16g1027 16 6846707 6856360 Lal23g0632 23 9056035 9065639 LSH
Lal15g1004 15 8062644 8067776 Lal23g0632 23 9056035 9065639 LSH
Lal23g0632 23 9056035 9065639 Lal8g0408 8 2756350 2767010 PCT
Lal8g0408 8 2756350 2767010 Lal23g0632 23 9056035 9065639 PCT