Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0601 ATGGCTGAGCTACAAGATTCAGAGACAGACACAAGTACTAACTCTTCTTCTTCACCATTGCCACCAACTTTCACTGTTACTGAACCCAACCCATCATTCTCAGACCCCCAAATACCCGAACCGGATCATAACAAACCGAAGAAACGGTCCAGAGATAGCAACATCAACCACTCTGTTTACAGAGGGGTTCGAATGCGTGCATGGGGAAAATGGGTATCCGAAATCCGAGAACCCAGAAAAAAGAACCGGATCTGGCTAGGTACCTTCGCAACTCCTGAGATGGCGGCGCGTGCGCACGACGTCGCTGCCATCACGATCAAAGGCACCTCCGCCATCCTAAACTTCCCTGAACTCGCCGGGTTGTTTCCCCGAGCTGAGTCCAACTCGCCCCGGGACGTTCAAGTTGCTGCAGCTAAAGCCGCAGCTATGGAAGTTTCCGAACCCCAAACGACGTCGTATTTGTCATCTTCTTCGACTTCGTGTTCGTCTTGTTGTGAATCTCATGAGGAGGAGCTGGGAGAAATAGTGGAACTGCCACATTTGGGTACTAGTTTTGAATCACCCGACCCGGTTAATAATGAGTTAGTGTTTTTTGACCCGGTTGATGTGTGGCCATGGTATCAAAACATTTATGATGGTGGGTACTATGTTGGGGATCATATTTCAATGCAAGAACTACTCACAGACTATGATGCTTTGTGGCTTTGA 708 0.4859 MAELQDSETDTSTNSSSSPLPPTFTVTEPNPSFSDPQIPEPDHNKPKKRSRDSNINHSVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAAITIKGTSAILNFPELAGLFPRAESNSPRDVQVAAAKAAAMEVSEPQTTSYLSSSSTSCSSCCESHEEELGEIVELPHLGTSFESPDPVNNELVFFDPVDVWPWYQNIYDGGYYVGDHISMQELLTDYDALWL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0601 235 MobiDBLite consensus disorder prediction 40 55 - -
Lal23g0601 235 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Lal23g0601 235 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Lal23g0601 235 MobiDBLite consensus disorder prediction 1 57 - -
Lal23g0601 235 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Lal23g0601 235 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Lal23g0601 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 209 - -
Lal23g0601 235 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
Lal23g0601 235 MobiDBLite consensus disorder prediction 1 33 - -
Lal23g0601 235 CDD AP2 58 118 IPR001471 GO:0003700|GO:0006355
Lal23g0601 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 8 209 - -
Lal23g0601 235 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700|GO:0006355
Lal23g0601 235 SMART rav1_2 59 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0601 Lal-Chr23 8796188 8796895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0601 24 217 AP2-EREBP Transcription Factor Family AT5G25810 51.980 3.48e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal23g0601 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0601 K09286 - gmx:100784134 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0601 23 8796188 8796895 Lal23g0601 23 8796188 8796895 ECH
Lal16g1072 16 7169028 7169774 Lal23g0601 23 8796188 8796895 LSH
Lal23g0601 23 8796188 8796895 Lal8g0372 8 2498798 2499466 PCT
Lal8g0372 8 2498798 2499466 Lal23g0601 23 8796188 8796895 PCT