Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0581 ATGTTAAATTTGCATTCCATTTTCTCTGTTTTACTACTTCTTCTCCTTCTCCAAAAACCCATTTCAACACAATGCTACACCAAGGGATTTAAACCTGGCCATTCTTCAGGAAATGGACTAACCATAAACATGACCAAAGTCCAGTTTTCAGAACAACAATTCATGAAATGGGTAGAGTTTGTAGGTGGCCTCAAACACAGTGTATTTGGGTCAGCCAAAAATAAGCTTTTTCCTTCATTCACTTTGAAAGTTTCTAAGAATCCTTCTAAAGGAGATTTTTCTTCAATTCAAGCAGCCATTGATTCCTTACCCTTCATCAATTTAGTGAGAGTGGTTATTAAGGTCCATGCAGGGGTATACAACGAGAAAGTTAACATTCCTCCATTGAAATCATTCATAACCATACAAGGATCAGGCGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACCAGGGCCAAGAGGTCAGCCACTAGGAACTTATGGTTCTGCAACTTTTGCAGTAAATTCGCCTTATTTCATTGCGAAGAACATAACATTCAAAAACACTACCCCGGTTCCGGAACCCGGAGCAGTTGGAAAACAAGCAGTGGCATTAAGAATTTCAGCAGATACCGCAGTATTCCAAGGCTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATCTCGGTCGGCATTACTATAAGGATTGTTATATTGAAGGCTCTGTCGATTTCATATTTGGCAATGCTCTTTCTCTATTTGAGGGATGTCACGTGCATGCGATAGCACAAAATACAGGGGCACTAACAGCCCAAGGAAGGGGTAGTATATTAGAGGACACGGGTTTCTCATTTGTGCACTGTAAGGTCACAGGATCTGGAGCACTATACCTTGGAAGAGCATGGGGACCCTTTTCTCGTGTTGTTTTTGCTTTCACTTATATGGACAATATCATCATTCCCAAAGGTTGGTCTAACTGGGGTGACCCTAATCGTGAAGTGACTGTATTCTATGGACAGTATAAATGCACAGGACCAGGAGCAGGGTTTGCAGGGAGAGTATCATGGTCAAAGGAGTTAACTGATGAGGAAGCTAAACCATTTATTTCAATTAACTATATTGATGGTTCTGATTGGATTAGGGATATTTTTTAA 1149 0.4082 MLNLHSIFSVLLLLLLLQKPISTQCYTKGFKPGHSSGNGLTINMTKVQFSEQQFMKWVEFVGGLKHSVFGSAKNKLFPSFTLKVSKNPSKGDFSSIQAAIDSLPFINLVRVVIKVHAGVYNEKVNIPPLKSFITIQGSGADKTIVQWGDTAQTPGPRGQPLGTYGSATFAVNSPYFIAKNITFKNTTPVPEPGAVGKQAVALRISADTAVFQGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRGSILEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAFTYMDNIIIPKGWSNWGDPNREVTVFYGQYKCTGPGAGFAGRVSWSKELTDEEAKPFISINYIDGSDWIRDIF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0581 382 PANTHER PECTINESTERASE 2 379 - -
Lal23g0581 382 SUPERFAMILY Pectin lyase-like 78 378 IPR011050 -
Lal23g0581 382 Pfam Pectinesterase 89 374 IPR000070 GO:0030599|GO:0042545
Lal23g0581 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 379 - -
Lal23g0581 382 Gene3D - 79 381 IPR012334 -
Lal23g0581 382 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0581 Lal-Chr23 8623299 8629246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0581 3 378 Carbohydrate Esterase AT5G47500 43.236 1.57e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0581 K01051 - tcc:18588499 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0581 23 8623299 8629246 Lal23g0581 23 8623299 8629246 ECH
Lal16g1088 16 7323842 7328731 Lal23g0581 23 8623299 8629246 LSH