Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0578 ATGTCTTGGCAAACTTATGTTGATGAACATTTGATGTGTGATATTGATGGCACTGGACATCACCTTAACGCTTCTGCAATCATTGGCCATGATGGCTCCGTTTGGGCTCAGAGCTCTTCTTTCCCTCAGTTTAAGCCTCAGGAGATCACTGGTATCATGAAGGATTTTGACGAACCTGGTCATCTTGCTCCTACAGGTTTGCACCTTGGTGGAACCAAATACATGGTCATTCAGGGAGAACCTGGAGCTGTTATTCGTGGCAAAAAGGGTTCTGGAGGTGTCACTATAAAGAAAACTGGTCAAGCTCTAGTTTTTGGTCTTTATGAGGAACCTGTGACTCCTGGACAATGCAACATGGTTGTTGAAAGGTTGGGAGATTACCTTATTGATCAGGGTCTCTAG 402 0.4453 MSWQTYVDEHLMCDIDGTGHHLNASAIIGHDGSVWAQSSSFPQFKPQEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGVTIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLIDQGL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0578 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Lal23g0578 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Lal23g0578 133 SMART prof_2 1 133 IPR005455 GO:0003779
Lal23g0578 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Lal23g0578 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Lal23g0578 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Lal23g0578 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Lal23g0578 133 PANTHER PROFILIN 1 133 - -
Lal23g0578 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Lal23g0578 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Lal23g0578 133 CDD PROF 2 132 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0578 Lal-Chr23 8593369 8596414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0578 1 133 Cytoskeleton Gene Families AT4G29340 82.836 5.76e-83 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0578 K05759 - gmx:100778045 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0578 23 8593369 8596414 Lal23g0578 23 8593369 8596414 ECH
Lal16g1091 16 7352345 7360514 Lal23g0578 23 8593369 8596414 LSH
Lal15g1036 15 8529144 8530924 Lal23g0578 23 8593369 8596414 LSH