Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0572 ATGGTTAAAGCAATTCTGATCTCAATCAAGCTCTTGTGTTCTTCCATAAAAAGAGAATTACAAATCAAGGCCTCATCATCAATTTTCATCAAGAGAGATAGCATCATGAATAAGATCAGCAAATTCAGCTGTGTGAGTGGCTATAATCTCATAGATGCTAAGCTTGAAGAGCATCATTTGTGTGGATCCAAACAGTGCCCAGGTTGTGGACACAAGTTTGAAGGAAAGAAGGATTGGCTAGGTCTACCAGCAGGAGTGAAGTTTGATTCAACAGATCAAGAACTCATAGAACATCTTGAAGCCAAAGTAGAAGCAAAATACTTGAAATCACACCCCTTGTTAGATGGGTTCATTCCTACTATTGATGGAGAAGATGGGATTTGTTATACCCACCCTGAGAGACTTCCAGGTGCAACAAGAGATGGTTTAAGCACACACTTTTTCCATAGAACATCAAAAGCATATACAACAGGGACAAGAAAAAGAAGAAAGATTCAAAACGAATGTGAAAACTTGCCAGGAGGAGAAACAAGGTGGCACAAAACTGGTAAAACCAGGCCAGTGATTGTTAATGGAAAACAAAAGGGGTGCAAGAAAATTCTAGTTCTCTATACCAATTTTGGGAAGAATAAGAAACCTGAGAAGACAAATTGGGTTATGCACCAATACCATTTGGGAGTGCATGAAGAAGAAAAAGAAGGAGAGCTTGTTGTGTCAAAAATGTTCTATCAGACACAGCCAAGGCAATGCAATTGGTCTGATAAAATTAGTGCAACAACAATAATTGGAGAACAACCTAATTGTATCAATGGTGGAAGAGACAGTGGAAGTAGTTGTTCTTCTAAGGAAATAATGTTTGATGTTGTTGGTGTTCCTCCATTGACAAGCTTCAACAATGCCTTTGATATTCAACAACTAAACTCTGAGCATTTCAGCTTCATGCAATTCAGAGAAGGCTTCGATGAGGTACATGTAATATAA 981 0.3833 MVKAILISIKLLCSSIKRELQIKASSSIFIKRDSIMNKISKFSCVSGYNLIDAKLEEHHLCGSKQCPGCGHKFEGKKDWLGLPAGVKFDSTDQELIEHLEAKVEAKYLKSHPLLDGFIPTIDGEDGICYTHPERLPGATRDGLSTHFFHRTSKAYTTGTRKRRKIQNECENLPGGETRWHKTGKTRPVIVNGKQKGCKKILVLYTNFGKNKKPEKTNWVMHQYHLGVHEEEKEGELVVSKMFYQTQPRQCNWSDKISATTIIGEQPNCINGGRDSGSSCSSKEIMFDVVGVPPLTSFNNAFDIQQLNSEHFSFMQFREGFDEVHVI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0572 326 Gene3D NAC domain 91 248 IPR036093 GO:0003677|GO:0006355
Lal23g0572 326 ProSiteProfiles NAC domain profile. 82 244 IPR003441 GO:0003677|GO:0006355
Lal23g0572 326 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 38 315 - -
Lal23g0572 326 Pfam No apical meristem (NAM) protein 83 225 IPR003441 GO:0003677|GO:0006355
Lal23g0572 326 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 38 315 IPR044799 GO:0003700
Lal23g0572 326 SUPERFAMILY NAC domain 77 244 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0572 Lal-Chr23 8564239 8570887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0572 49 263 NAC Transcription Factor Family AT5G56620 71.304 2.86e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal23g0572 NAM 4.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0572 - - lang:109332503 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0572 23 8564239 8570887 Lal23g0572 23 8564239 8570887 ECH
Lal16g1096 16 7391061 7397573 Lal23g0572 23 8564239 8570887 LSH
Lal23g0572 23 8564239 8570887 Lal25g0130 25 815121 821641 PCT