Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0566 ATGATGCTAAGCGAAGAACACCACCCAACGATGCACGTGCCTCACGTGCCACCGTGGCCTTCCTTCGACGACGTTATATTTTTCCCCCTTTCCGTTAACGGCGACGTTAATGCCGTTAACGCTGGTGATTACTCTCCGTACTACTTGGACGAAGCACTTTCTGCGATGCAACGCTACCTTCCCTCCATCGACGACGGCGACGGAGACTATGAGTTTGATATTCCGGCGAGGGAGTTGGAGTCTCCGGTGGATGCGTTTTCGTGCGACCATTTCAGAATGTTCGATTTCAAGATTCGGAGGTGCGGACGTGGCAGGTCACATGATTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAGGCACGCCGCCGTGACCCGAGGAAGTTTCATTACTCCGGCACGGCGTGTCCTGATTTTCGCAAAGGTGGATGTCAGAAAGGTGATGCATGTGAATTCTCGCACGGCGTTTTCGAGTGCTGGCTCCACCCAGCGCGTTACCGGACTCAGCCATGTAAGGACGGTGTAAGTTGCCGGAGGAGAGTATGTTTCTTCGCTCACACGGCGGAGCAACTTAGGGTTCTGCCTCAACATAGTCCCCGAAGCGCTGACTCATATGATGGTTCACCTCTCCGGCTAAAAACACTGCAATTTATTCCATCTCCTGAATTGAATTCTCCAATTGAATCTCCTCCGGTGTCACCGTTGACGCAATCAATGGTGTTCTCGTTGCGAAACATGCAACTTGAGAAGATGAAGTCCTTACCATCTTCTTGGAACATTCCAATTGGGTCTCCTCGGTTCGGATCTCCTGTGGGACCCGTGACCCGACTCGGATTCTCCAGCCTGCCTTCTACTCCAACTACTCCGGGTCGTGCCGGGGTTAATTGTTTTGAACTGTGGGACCAGAATTGTTGTGTGGAGGAGCCTGTGATGGAGAGGGTGGAATCTGGAAGAAATATAAGGGCCAAGATGTTTGAGAAGTTGAGCAAAGAGAATTCTCTTGGTAAACCGGGTTCGGGTCAGGGTAAAACCGGTGGGGCTCCGGATGTTAGTTGGGTTTCAGAGCAGTAA 1071 0.5201 MMLSEEHHPTMHVPHVPPWPSFDDVIFFPLSVNGDVNAVNAGDYSPYYLDEALSAMQRYLPSIDDGDGDYEFDIPARELESPVDAFSCDHFRMFDFKIRRCGRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGGCQKGDACEFSHGVFECWLHPARYRTQPCKDGVSCRRRVCFFAHTAEQLRVLPQHSPRSADSYDGSPLRLKTLQFIPSPELNSPIESPPVSPLTQSMVFSLRNMQLEKMKSLPSSWNIPIGSPRFGSPVGPVTRLGFSSLPSTPTTPGRAGVNCFELWDQNCCVEEPVMERVESGRNIRAKMFEKLSKENSLGKPGSGQGKTGGAPDVSWVSEQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0566 356 ProSiteProfiles Zinc finger C3H1-type profile. 131 157 IPR000571 GO:0046872
Lal23g0566 356 Gene3D - 127 198 - -
Lal23g0566 356 MobiDBLite consensus disorder prediction 328 356 - -
Lal23g0566 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 14 355 - -
Lal23g0566 356 PANTHER UNKEMPT FAMILY MEMBER 14 355 IPR045234 -
Lal23g0566 356 SMART c3hfinal6 165 188 IPR000571 GO:0046872
Lal23g0566 356 SMART c3hfinal6 130 156 IPR000571 GO:0046872
Lal23g0566 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0566 Lal-Chr23 8530395 8531465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0566 86 234 C2H2 Transcription Factor Family AT5G12850 57.962 9.72e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal23g0566 zf-CCCH 4.9e-05 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0566 23 8530395 8531465 Lal23g0566 23 8530395 8531465 ECH
Lal16g1099 16 7437938 7438942 Lal23g0566 23 8530395 8531465 LSH