Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0560 ATGGTTGACACCAAGGGCAGGAAGGAAGAGGTTGTTACTCGAGAATACACCATCAACCTCCACAAACGCTTACATGGATGCACATTCAAAAAGAAGGCTCCCAAAGCAATCAAGGAGATAAGGAAGTTTGCCCAGAAAGCCATGGGTACCAATGACGTGAGAGTGGATGTGAAGCTGAACAAGTATGTGTGGAGCCAGGGGATCCGAAGTGTCCCAAGGAGGATCCGAGTACGCATTGCACGTAAGAGAAATGACGATGAAGATGCAAAGGAAGAGCTCTATTCCCTTGTCACCGTTGTTGAAATCCCCAAGGAAGAGCTCAAAGGTTTGGGCACCAAGGTTATTGATGATGAGGATTGA 360 0.4722 MVDTKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0560 119 CDD Ribosomal_L31e 8 91 IPR000054 GO:0003735|GO:0005840|GO:0006412
Lal23g0560 119 Gene3D - 8 119 IPR023621 -
Lal23g0560 119 SMART Ribosomal_L31e_2 9 92 IPR000054 GO:0003735|GO:0005840|GO:0006412
Lal23g0560 119 Pfam Ribosomal protein L31e 10 91 IPR000054 GO:0003735|GO:0005840|GO:0006412
Lal23g0560 119 PANTHER 60S RIBOSOMAL PROTEIN L31 6 119 IPR000054 GO:0003735|GO:0005840|GO:0006412
Lal23g0560 119 ProSitePatterns Ribosomal protein L31e signature. 53 67 IPR020052 GO:0003735|GO:0005840|GO:0006412
Lal23g0560 119 PANTHER OS06G0319700 PROTEIN 6 119 - -
Lal23g0560 119 SUPERFAMILY Ribosomal protein L31e 10 91 IPR023621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0560 Lal-Chr23 8471837 8474158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0560 1 119 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 80.672 1.37e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0560 K02910 - gmx:100305583 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0560 23 8471837 8474158 Lal23g0560 23 8471837 8474158 ECH
Lal16g1103 16 7458433 7461164 Lal23g0560 23 8471837 8474158 LSH