Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0543 ATGGAGAGAGAAACGTGTAAGCAATTTCCATGTCATGGTGGAAAAAGCTTATTGACAGTTGCTGCTATTAGGAAGAAACATTTACAGAAAGAGATGAACGTTAATGCAACTTCTTCTTCATGTTCTAGAAAGAATAAAAAGCGTAACGGTTTTCAGAAGCAGTTATTAACACCAGATTATGATTCGAATGATTTGTTCCGTGATTTTGATTTTCTCACTTCTGGGCCCAAAAATTATGTTCCTTATTGTCCAGAGAACCAAGGACCCACCAAAAGGAAGACGGTTTCCAAGAGTGCAATTGTGAGTCATCCTCATTGTAATATGGAAGTGCCTGTGAAGAAACATGGTCTTGGCAAGGGTTTGATGACAGTTTGGAGGGCAGCAAATCCCAATGCTGGAGACCTTCCAATTGGATATGGTTTGGCCAACCGAGAAGTTCGGCTAACCTCAAATTCTATTCTACAGAAACCAGTCTCTGATAACAAGAGGTCACGGAAAACAGTAACCACAAATGGAATGCTAGAAAATAAAATTCAGAATAAGAGAAATAAATTACAGGATAAGAGGAATTTAGCAATTCAAAGAAGAGTGGGGGAATCTAACCAATATGTGAGTCAGATCCAGCCACCGAAGGAAAAATGTGATCTTGCTTTGGATAGTGCAATATCTACAGAGGTAGTTGGTCGAATTGCAATGTTAATTGATGATGAAGAGCTTGAGCTGAGAGAGCTACAAGCTGGGACTGACCTGCTTATGTGTTCTGATCATCTTGCTACCAGTGGAATGCTTGGCTGCTCACTTTGTAAAGATGTGCTAGTTAAGTTCCCCCCGGATACTGTCAAGATGAAGAAACCTATCTGTTTGCAACCTTGGGTCTCCTCTCCAGAAATTGTGAAGAAATTATTTAAGGTTTTCCATTTCCTCTATACGTATGCTGTAGTTGTTGATACATGCCCCTTCACTCTTGACGAGTTTGTTCAAGCATTTCATGATAAGGACTCAATGTTACTTGGAAAGATTCATGTGGCCCTTCTTACTGTTCTTCTGTCTGACATTGAAGTGGAACTTACTAATGGGTTTTCACCTCATTTAAATAAGTCATGCAACTTTCTTGCACTGCTTCACTCGATTGAAAGTCAAGAATGTTCCTTGAATTTCTGGAGAAGATCTCTTAATCCTCTTAGTTGGATTGAAATACTCCGTCAAGTTCTGGTTGCTTCTGGATTTGGTTCAAAACAAGGTGCTTTACGCAGAGAGACCCTTAGCAAGGAACTGAATCTTCTTGTAAACTATGGCCTACGCCCTGCAACCTTGAAGGGTGAGTTGTTTAAAATCTTGTTAGAGCGAGGAAACAATGGATGCAAAGTATCCGAGCTAGCGAAGTCAATGCAGATTGCAGAATTAGACCTCGTCAGCACAACAGAGGAGCTGGAGTCCTTAATATGCTCGACACTTTCTAGTGATGTTACTTTGTTTGAAAAGATTTCATCATCGGCATATCGATTGCGTATGAGCACTGTTACAACTGACAATGATGAATGTGAGTCAGATATGGAGGACTCTGGTAGTGTTGATGATGAACTTAATGACAGTGATTCATGTAGCAGTGGTGATGATTTTGCAAGTGATTCAAGAATCTCCAATATAAGAAAACTGAAGCGTGCAACCAGTCACAAAATAAAAAATAATATGTACACCGAAATTGATGAGAGCCATCCAGGGGAAGTGTGGTTGTTAGGACTTATGGACAGTGAGTATTCAGATTTGAACATTGAAGAAAAATTGAATGCATCGGTGGCTCTAACCGATCTTCTTTCATCTGGATCCAGCATCAGGATGAAGGATCCAATGAAAGCTACAGCTGATTACAATTCTAGCATCCCATTTTGTGGGTCCGGAGCAAAAATAAAGAGATCCGTAGTAAAGAAGCCTGGGCCATCTTGGAACCAGACTGCACAAATGCAAGCGCAGTCTACTTTTCATCCATGTCCAGTAGATTCCTCATCATTAAACTCAAATGTCAATAATCATGAGGGTTCCTCTGACAATGGAATAGGTTCAACTGGTTCACATCTCATTCAATCAGTGTTTTTGGGATCTGATCGTAGGTACAATAGATATTGGCTTTTCTTGGGCCCTTGCAATGCAGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGCAGAGGCCTTGTGTGCCTTGGTGTCAGTACTAGATGATAGAGGGAAACGGGAGGCTCTTCTTATTGAATCTTTGGAGAGACGGCAAGAACCTCTATGCAGATCTATGTCTAGGATTAAGGTTAGCTGTACTGGAATGAGTTGTATGTCACGTTCTGATCAATCTGAGCTGGATATGGTCACAGAAGACAGTTACTCTCCCATATCTGATGTAGACAATCTGAATCTGACTGAGACTGCCGAAGACTCTTTGCCTTCAGCTGGGGCTGTGGTAATTGCAGCTGGAAAGAAGGGAGAGGAACAAGTGCAAAAGTGGCTCCGTATTCAAGAATATGATTCTTGGATTTGGAGTTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCGTATCTTGACTCTCTAGCCAGATGTAAGAGTTGTCACGATCTTTACTGGAGAGACGAGAGACACTGCAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAGTCCACATAGCCACATGCAGGGAGAAAGAAGACAGCAATATATTTCCAAACCATAAAGTCTTGTCATCACAGATTCAATCACTGAAAGCTGCAATATATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTGGTGGGTGCTTGGAAGAAGTCTGCTCATAAGCTATGGGTCAAACGACTCAGACGCACCTCAACTTTAGTGGAGCTTATGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAATAAGGACTGGTTGTTTCAATGCCAGTTTCCTGATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCTCATACATCATCTGCCCTTGCTCTATGGTTAGTGAAGTTAGATGTCATAATTGCTCCTTACCTGGACCGAGTCCATCCTCAGAAGAAGCAAGGAATCAGTAAGAGTTAA 3159 0.4115 MERETCKQFPCHGGKSLLTVAAIRKKHLQKEMNVNATSSSCSRKNKKRNGFQKQLLTPDYDSNDLFRDFDFLTSGPKNYVPYCPENQGPTKRKTVSKSAIVSHPHCNMEVPVKKHGLGKGLMTVWRAANPNAGDLPIGYGLANREVRLTSNSILQKPVSDNKRSRKTVTTNGMLENKIQNKRNKLQDKRNLAIQRRVGESNQYVSQIQPPKEKCDLALDSAISTEVVGRIAMLIDDEELELRELQAGTDLLMCSDHLATSGMLGCSLCKDVLVKFPPDTVKMKKPICLQPWVSSPEIVKKLFKVFHFLYTYAVVVDTCPFTLDEFVQAFHDKDSMLLGKIHVALLTVLLSDIEVELTNGFSPHLNKSCNFLALLHSIESQECSLNFWRRSLNPLSWIEILRQVLVASGFGSKQGALRRETLSKELNLLVNYGLRPATLKGELFKILLERGNNGCKVSELAKSMQIAELDLVSTTEELESLICSTLSSDVTLFEKISSSAYRLRMSTVTTDNDECESDMEDSGSVDDELNDSDSCSSGDDFASDSRISNIRKLKRATSHKIKNNMYTEIDESHPGEVWLLGLMDSEYSDLNIEEKLNASVALTDLLSSGSSIRMKDPMKATADYNSSIPFCGSGAKIKRSVVKKPGPSWNQTAQMQAQSTFHPCPVDSSSLNSNVNNHEGSSDNGIGSTGSHLIQSVFLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTAEALCALVSVLDDRGKREALLIESLERRQEPLCRSMSRIKVSCTGMSCMSRSDQSELDMVTEDSYSPISDVDNLNLTETAEDSLPSAGAVVIAAGKKGEEQVQKWLRIQEYDSWIWSSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAVHIATCREKEDSNIFPNHKVLSSQIQSLKAAIYAIESVMPEDALVGAWKKSAHKLWVKRLRRTSTLVELMQVLADFVGAINKDWLFQCQFPDGVVEEIIASFASMPHTSSALALWLVKLDVIIAPYLDRVHPQKKQGISKS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0543 1052 MobiDBLite consensus disorder prediction 508 541 - -
Lal23g0543 1052 PANTHER OS07G0619600 PROTEIN 41 1047 - -
Lal23g0543 1052 MobiDBLite consensus disorder prediction 512 533 - -
Lal23g0543 1052 ProSiteProfiles DDT domain profile. 295 354 IPR018501 -
Lal23g0543 1052 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 573 612 IPR028942 -
Lal23g0543 1052 SMART testlast3 295 354 IPR018501 -
Lal23g0543 1052 Coils Coil 171 191 - -
Lal23g0543 1052 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 694 767 IPR028941 -
Lal23g0543 1052 MobiDBLite consensus disorder prediction 34 54 - -
Lal23g0543 1052 Pfam DDT domain 298 351 IPR018501 -
Lal23g0543 1052 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 41 1047 IPR044977 GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0543 Lal-Chr23 8263920 8278964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0543 217 1034 Homeobox Transcription Factor Family AT5G44180 25.223 1.08e-62 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lal23g0543 WSD 5.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0543 - - aprc:113853612 1588.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1121 16 7577581 7588797 Lal23g0543 23 8263920 8278964 LSH