Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0540 ATGTCAAGGTCAATGTCAGAGAAGAAGTTAGGTGCAGGAAGAGTTGTGGCTGTGGCAATTGAAAACAACAAAACAAGCCAATATGCTGCAAAATGGGCTGTTGATAATCTTCTTCCAAAAGATCAGTGTTTGTTATTAGTTCATGTTAAACAAAGAGCTTCATCTATTGCTACACCAATGGGAAGCCAGATAGCCCTAGATGCTAATGATGATGTGGCTAGAGCATACAAGCAACAATTGTACAATGAATCGAGGGAACTTTTCGCTTCATTTCGTGTCTTCTGTAATAGAAAGAATATACAATGCCAAGAGGTCTTATTGGAGGACACAGATGTAACTAAGGCATTAATAGAAAGTGTTACAACATATTCCATTGAGCTTTTGGTACTTGGGGCACCATCAAAGAGTGGTCTTGTCAGAATCCTAGTTTTGACTAATGTTTTGTATGACAGAAGGTTTAGGACTACAGATGTCCCAAACTTGGTGTCAAAAGGGGCACCACCATTCTGCACTGTGTATATTATTTCCAAAGGAAAAATCTCAACTGTGAAATCTGCTACTGCTCCATTAACTACTAAAGCTACGATCCGTAACAACGCATCGCAACCGCAATATCAGCTTGCCCCTAGTCCTGAAAGAATGGATGCACGATTGATGCGCAACCATCCACCGCGACCATCAACAGAGAAACCAATATATGGTGCACCTCGATTATCAGATGATGAAATCAGATCACCCTTCACGAGAGCTGGTAAACCATATTACAAATCATACGAGTCCTCAATTCCCGATTCTGATATATCGTTCGTCAGCAGCGGAAGGCCAAGCATTGACAGGATGTTCCCTTCATTTTATGAAGAAATGGACTCTGGAAGGCTTTCATCAGGCTCAGATTATGATGCCAGAAGCTATGGTTCATCTTTCTCGGGTGCTAAATCGATTGATCAGGGTGATTACTCGTTTTGTTCACAAGACAGTGGATTCTCAATATCATCATCAACGAGGTTATCAATTTCGGATGATGTTGAAGCTGAAATGAGGAGACTGAAGTTAGAACTGAAGCAGACAATGGAAATGTATAGTACAGCTTGTAAGGAAGCTCTCACAGCAAAGCAAAAGGCAATGGAACTTCAGCATTGGAAATTAGAAGAACAAAGGAAAATGGAAGAGTCGCGAATGGTTGAAGAATCGGCATTGGTAGCGGCTGAGAAGGACAAAGTAAAAGCTAAAGCCGCCATGGAGGCAGAAGAAGCAAACCGAAAAATTGCGGAATTCAAAGCACAACAAAGAATGAACACAGAATCTGATCAGAAGAAGACAGTAGATAGTATTGGACATGGTCCTGCCAGATACAGAAGGTACGATATCGAGGAAATCGAAGAAGCAACAAACAACTTTTCCCCCTCTCTCAAGATTGGTGAAGGAGGTTATGGACCAGTATATAGGTGTGAACTAGATCACACACCAGTAGCAGTTAAAGTGCTAAAGCCAGATGCAGCTCAAGGACGGTCGCAGTTTCAGCAGGAGGTTGAAGTGCTAAGTTGCATGAGGCATCCAAACATGGTTCTCCTCCTTGGAGCGTGTCCTGAGTATGGTTGCCTAGTGTATGAGTACATGGCTAATGGAAGCTTGGATGATTGCCTTTTCAGGAGAGGTAAGTCACCAGCAATTCCTTGGCAGCTAAGATTTAGAATTGCTGCAGAAATTGCCACCGGACTCAATTTCCTCCATCAGGCAAAGCCTGAACCGCTGGTGCATCGTGACTTAAAACCTGGAAACATTCTGCTTGACCGCAACTTCGTGAGCAAGATCAGTGATGTTGGGTTGGCCAGGCTTGTCCCTCCTTCTACTGCGGACACTGTGACACAGTATCGAATGACATCAACTGCCGGAACATTCTGTTACATTGATCCTGAGTACCAGCAAACGGGCATGTTGGGAATCAAGTCAGATGTATACTCACTTGGGATCATGCTACTACAGATCATAACAGCCAAGCCACCAATGGGATTGACTCATCATGTTGGAAGGGCTATTGAGAATGGTACTTTTTCTGAGATGCTTGACCCTGCAATTGAAGATTGGCCAGTCGAACATGCTATGCATTTTGCTAAGCTCGCATTGCAGTGTGCGGAAATGAGAAAAAAAGATAGACCCGATCTAGGGAAAGTTGTATTGCCTGAGCTTAATAAGCTAAGAGATTTCGCTGAAGAAAACTTGCCAATGATGATGATGTTTGGTGCAGGATTCGCGCCCAGAAACACTTATTCGCGTTCGGCATTTTTCTCATCCACAATTCAAGATGCTATGAGTGAATCTCAAATGTCTGGAATGTCTGGTTACGAAAGCCGATCAAGCTCATCGTCACATAGTAATAATAACAGTTTTGTTGCAACAAGGATGATTTGA 2409 0.4288 MSRSMSEKKLGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQCLLLVHVKQRASSIATPMGSQIALDANDDVARAYKQQLYNESRELFASFRVFCNRKNIQCQEVLLEDTDVTKALIESVTTYSIELLVLGAPSKSGLVRILVLTNVLYDRRFRTTDVPNLVSKGAPPFCTVYIISKGKISTVKSATAPLTTKATIRNNASQPQYQLAPSPERMDARLMRNHPPRPSTEKPIYGAPRLSDDEIRSPFTRAGKPYYKSYESSIPDSDISFVSSGRPSIDRMFPSFYEEMDSGRLSSGSDYDARSYGSSFSGAKSIDQGDYSFCSQDSGFSISSSTRLSISDDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAMELQHWKLEEQRKMEESRMVEESALVAAEKDKVKAKAAMEAEEANRKIAEFKAQQRMNTESDQKKTVDSIGHGPARYRRYDIEEIEEATNNFSPSLKIGEGGYGPVYRCELDHTPVAVKVLKPDAAQGRSQFQQEVEVLSCMRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGKSPAIPWQLRFRIAAEIATGLNFLHQAKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSTADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDVYSLGIMLLQIITAKPPMGLTHHVGRAIENGTFSEMLDPAIEDWPVEHAMHFAKLALQCAEMRKKDRPDLGKVVLPELNKLRDFAEENLPMMMMFGAGFAPRNTYSRSAFFSSTIQDAMSESQMSGMSGYESRSSSSSHSNNNSFVATRMI 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0540 802 ProSiteProfiles Protein kinase domain profile. 466 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0540 802 Coils Coil 339 359 - -
Lal23g0540 802 SMART serkin_6 466 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0540 802 SUPERFAMILY Protein kinase-like (PK-like) 448 725 IPR011009 -
Lal23g0540 802 Gene3D Transferase(Phosphotransferase) domain 1 539 742 - -
Lal23g0540 802 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 1 790 - -
Lal23g0540 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Lal23g0540 802 Coils Coil 399 428 - -
Lal23g0540 802 Pfam Universal stress protein family 14 146 IPR006016 -
Lal23g0540 802 MobiDBLite consensus disorder prediction 773 802 - -
Lal23g0540 802 PANTHER OS02G0152300 PROTEIN 1 790 - -
Lal23g0540 802 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 142 - -
Lal23g0540 802 Pfam Protein kinase domain 471 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0540 802 Gene3D Phosphorylase Kinase; domain 1 445 538 - -
Lal23g0540 802 CDD STK_N 15 178 - -
Lal23g0540 802 Gene3D HUPs 14 164 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0540 Lal-Chr23 8214868 8219340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0540 16 775 Receptor kinase-like Gene Family AT5G35380 54.889 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal23g0540 Pkinase 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0540 - - gmx:100803837 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0540 23 8214868 8219340 Lal23g0540 23 8214868 8219340 ECH
Lal16g1124 16 7610593 7614010 Lal23g0540 23 8214868 8219340 LSH