Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0535 ATGGGTAGTTGCTTAAGCATTGATGAAGTTAACACAAATAATACTACAAAACCTAAGCCTTCAGCTAGTTCGGTAGGACATGAATCTTCGTCTATATCAACAACTTCGATGAATATCAAGGATCTGCGAGAAGGTGCTGGATACAGCGATGTTGATATTTTCAGTTATGAAGAATTGAGGCTCGCTACGAAGCATTTTCGCCCGGATTTGATCTTAGGAGAAGGTGGTTTTGGAGTTGTGTATAAAGGAATCATAGATGATAGTGTCAGGTCAGGCTATAAGTCGATTCAAGTGGCGATTAAGGAGCTTAACCGGGAAGGTTTTCAAGGTGATAGGGAATGGCTTACTGAAGTTAACTATTTAGGTCAATTTAGTCACCCAAACCTTGTGAAGCTCATTGGATACTGCTGTGAGGATGATCACAGGTTATTGGTCTATGAATACATGGCAAACGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACACTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGAGGGCTTGCTTTTCTCCATGGTGCAGAAAGGCCCATCATATATCGTGACTTCAAGACATCAAATATCTTGCTAGATGCGGATTTCAATGCAAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGACCAATGGGGGACCAAACTCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACTGCTCGAAGCGATGTGTATGGTTTCGGTGTGGTGCTACTTGAAATGCTTATTGGTAGGAGAGCATTAGACAAGAGCAGACCCAGCCGAGAGCACAATTTGGTTGAGTGGGCACGCCCGCTATTGAATAACAAAAAGGTAGTGAGAATTTTAGATCCCAAAATGGCCGGGCAATATTCCTCTAAAACTGCAATACGGCTGGCACATCTAGCGTACCAATGCCTTAGCCAAAACCCGAAAGGCAGACCTCTAATGAGCCAGGTTGTTGAATTTCTTGAAAATTATCAGCCAGAGGGGGCAAAGGAAGAAGATCAAATGCTTCGAAGTGGAAGTAGCAGTGTAACCATTAATGAAGTTCCAAAGGGAAGTGATGACACTACAACTGAAGGGAAAAAACAAAACTAA 1155 0.4277 MGSCLSIDEVNTNNTTKPKPSASSVGHESSSISTTSMNIKDLREGAGYSDVDIFSYEELRLATKHFRPDLILGEGGFGVVYKGIIDDSVRSGYKSIQVAIKELNREGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDDHRLLVYEYMANGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNNKKVVRILDPKMAGQYSSKTAIRLAHLAYQCLSQNPKGRPLMSQVVEFLENYQPEGAKEEDQMLRSGSSSVTINEVPKGSDDTTTEGKKQN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0535 384 SUPERFAMILY Protein kinase-like (PK-like) 50 352 IPR011009 -
Lal23g0535 384 CDD STKc_IRAK 72 344 - -
Lal23g0535 384 PANTHER OS01G0588500 PROTEIN-RELATED 17 382 - -
Lal23g0535 384 MobiDBLite consensus disorder prediction 1 32 - -
Lal23g0535 384 Gene3D Transferase(Phosphotransferase) domain 1 149 366 - -
Lal23g0535 384 MobiDBLite consensus disorder prediction 350 384 - -
Lal23g0535 384 MobiDBLite consensus disorder prediction 356 373 - -
Lal23g0535 384 Gene3D Phosphorylase Kinase; domain 1 42 148 - -
Lal23g0535 384 Pfam Protein tyrosine and serine/threonine kinase 71 342 IPR001245 GO:0004672|GO:0006468
Lal23g0535 384 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Lal23g0535 384 ProSiteProfiles Protein kinase domain profile. 66 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0535 384 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 17 382 - -
Lal23g0535 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0535 Lal-Chr23 8157357 8163568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0535 13 342 Glycoside Hydrolase AT3G07070 47.305 3.45e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal23g0535 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0535 - - lang:109349878 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0535 23 8157357 8163568 Lal23g0535 23 8157357 8163568 ECH
Lal16g1127 16 7637541 7643514 Lal23g0535 23 8157357 8163568 LSH