Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0534 ATGTTGGACGGTGGGGAAAAATTCCATGGAATGATAGACCTGAACAAACATAATAACTATTATGATATTTCTCAAGCCTTTTACCATAAGCTTGGGGAGGGTACCAATATGTCAATTGACAGTGTTGGGAGCTTGCAAACAAGTAACGCTGGAGAATCTGTTGCAATGTCTGTTGATAATAGCAGTGTTGGGTCCAATGATTCCCATACCCGCATGTTGGACCACCAAGGATTGAAGAGGCGTGCCAATGATAACTACTCTGTTGCTCAGAGTGTCAATCATCGAGGAAGAGTCACACATGCTTTAAGTGACGATGCCTTGGCTCAAGCTCTTATGGACAGTAGTTTTCCGACTGAGGGTCTTGACAATTTTCATGAGTGGACAATTGATTTGAGGAAGCTTAATATGGGTGAGGCTTTTGCTCAAGGAGCTTCTGGGAAACTTTATAGGGGTACTTACAATAATGAAGATGTTGCTATCAAAATCTTGGAGAGGCCAGAAAATGATCCATCAAAGGCACAGTTGATGGAACAACAGTTTCAGGCAGAGGTCATGATGTTAGCGACGCTAAAGCATCCTAACATAGTCCGTTTCATTGGTGGGTGCCATAAGCCAATGGTATGGTGCATTGTGACCGAGTATGCCAAAGGCGGTTCAGTTCGACAGTTTTTAATGAAGCGTCAAAACCGATCAGTTCCTCTAAAATTGGCTGTCAAACAAGCTTTGGATGTTGCAAGGGGAATGGCATATGTTCATGGCCTTGGGTTGATACACAGGGACTTGAAATCTGATAATCTTTTGATTTTTGGTGACAAATCAATTAAAATTGCTGACTTTGGAGTTGCCCGGATTGAAGTGCAAACTGAAGGAATGACACCTGAGACTGGAACGTACCGTTGGATGGCTCCGGAGATGATCCAGCATAGGCCCTACACTCAAAAAGTGGATATATATAGCTTTGGGATTGTTCTGTGGGAACTCATCACTGGAATGCTTCCATTTCAGAACATGACAGCAGTACAGGCAGCATTCGCTGTTGTCAACAGAAATGTTCGCCCAATCATACCTGATGATTGCTTACCTATTCTCCGCGAGATCATGACAAAATGCTGGGACCCCAACCCTGATGTCAGGCCACCATTTGCTGAAATTGTAGGAATGCTCGAGACTGCGGAGACTGAGATCATGACAACAGTTCGGAAGGCTCGTTTCAGGTGTTGCATGACTCAACCAATGACTGCTGACTGA 1248 0.4407 MLDGGEKFHGMIDLNKHNNYYDISQAFYHKLGEGTNMSIDSVGSLQTSNAGESVAMSVDNSSVGSNDSHTRMLDHQGLKRRANDNYSVAQSVNHRGRVTHALSDDALAQALMDSSFPTEGLDNFHEWTIDLRKLNMGEAFAQGASGKLYRGTYNNEDVAIKILERPENDPSKAQLMEQQFQAEVMMLATLKHPNIVRFIGGCHKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDIYSFGIVLWELITGMLPFQNMTAVQAAFAVVNRNVRPIIPDDCLPILREIMTKCWDPNPDVRPPFAEIVGMLETAETEIMTTVRKARFRCCMTQPMTAD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0534 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Lal23g0534 415 CDD STKc_MAP3K-like 141 388 - -
Lal23g0534 415 Gene3D Phosphorylase Kinase; domain 1 123 216 - -
Lal23g0534 415 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 5 406 - -
Lal23g0534 415 ProSiteProfiles Protein kinase domain profile. 134 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0534 415 Pfam Protein tyrosine and serine/threonine kinase 135 387 IPR001245 GO:0004672|GO:0006468
Lal23g0534 415 SMART serkin_6 134 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0534 415 SUPERFAMILY Protein kinase-like (PK-like) 117 388 IPR011009 -
Lal23g0534 415 PANTHER SERINE-THREONINE PROTEIN KINASE 5 406 - -
Lal23g0534 415 Gene3D Transferase(Phosphotransferase) domain 1 217 411 - -
Lal23g0534 415 PRINTS Tyrosine kinase catalytic domain signature 212 225 IPR001245 GO:0004672|GO:0006468
Lal23g0534 415 PRINTS Tyrosine kinase catalytic domain signature 250 268 IPR001245 GO:0004672|GO:0006468
Lal23g0534 415 PRINTS Tyrosine kinase catalytic domain signature 296 306 IPR001245 GO:0004672|GO:0006468
Lal23g0534 415 PRINTS Tyrosine kinase catalytic domain signature 315 337 IPR001245 GO:0004672|GO:0006468
Lal23g0534 415 PRINTS Tyrosine kinase catalytic domain signature 359 381 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0534 Lal-Chr23 8140334 8144335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0534 23 415 MAP Kinase Kinase Kinase AT2G24360 78.372 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal23g0534 PK_Tyr_Ser-Thr 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0534 - - gmx:100788536 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1129 16 7666369 7673214 Lal23g0534 23 8140334 8144335 LSH