Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0525 ATGGAAGAGGGTGATGATCAATTCTATGATACCCGTGAGGAATTGTGTTCTGTCTCTGATGTGGATTCAGATGGCTCTGAAGCCAATGAATCTAGTTCTGGTAATGGATATGCTACTAGTTACCATGTTTGGACAAATGATCTTCAAAGTGTTCATCTGAGACGCCTCAATTTCAAAAGATGGATGGGTTTAGAGTCAGATTCTGATGCCAATTTAATGATGGGGGATGTAGAGTTGGCAGATTCATCTTGTGGAGTTGGCCGAATCACTGTGAGCTGTAGAGCATTGCTGAGAAGTTTGGGTGTTGTAGATGGCTCAAGTCAGATTGTGTCGAATTCTTTATCTAACGAAATCTGTATTATAGAAAACCGAGGTGTTGAGGATGAGAATTTGGCACGTACGATAAAGAATTTGGATGATGGGACACAGTACGTTGTTGATAAATTGGGCCCGGATGGAACGCTTAGCACGCTGCGTGTTGTCGGTTCTGACCAATCGATTAGCTTGGAAGAGTTTCAGAGAAATATTATGCCAACGCCTCAGCTTCGGAGACATTTGCAGAGAGATGCCGAGAACACAAGAGTTCCGGGTATTGCGAAAAAGAAAATGAAGAAGGATTGGCTAAAGAAATTGGGTTCAGTGGCTTGTGTTGTTCATGATCAAGAGCTTGATGAAACGGACGGCAAAGACTTTGATTCAGTAGATAGAAGTAGAAAACAGAGAGCTAGAGTTCATTCGTTTAGGAAGCGAATTAAGGAGCTTACCTCCCTTCACACTGAACAGGAGTTCAAAGCACATAAGGGTGTTATTTTGACCATGAAGTTCAGTCTTGATGGAAAATATCTGGCTACAGGTGGTGAAGATGGCATTGTATGTGTGTGGAAGGTGGTTGAGGGTGAAAGATCAAGTAAATTCGAGATTCTTGACAACGATCCGTCAAGTACATATTTCAAAATGAATAGTTTTTCATGCCTATCTCCGATGGATGTAGACAAAGAGAAACTAGTTAACACGGACAAGTTGAAGAGATGGTCTAGTTCAACCTGTGTGATTATCCCGCCAAAGACCTTCCGTATATTGGAGAAACCTTTGCATGTGTTCCATGGGCACAAAGGCGACATTTTAGACCTTGCATGGTCCAAAAGAGGGTATGTACTATCATCCTCAGTTGATAAGACAGTACGCCTATGGCAAGTAGGAATTGACAAATGCCTTAGAGTTTATTCCCACAATAATTATGTGACATGTGTCAATTTCAACCCTGTCAATGATAAATTTTTCATCAGTGGTTCAATTGATGGGAAAGTTCGCATCTGGGAAGTTCTTTGCTGTCGAGTTGTTGATTACATTAATATCAGAGAGATAGTCACCGCTGTGTGTTTCCGTCCTGATGGGAAGGGCACAATTGTGGGTACCATGATAGGCAATTGCCGATTTTATGATATCAAAGATAATCATCTACAATTGGATGCTCAATTAATCTTAGGAGGCAAAAAGAAGACACCGGGGAAAAGGATCACTAGCTTGCAGTTTTCGCCAAATGACCCAAGCAAATTGCTGGTTGCTTCTGCTGATTCACATGTTTGTATACTTTCTGGATTTGATGTCGTCTACAAATTCAAGAGTAGGTCCTTTCATCTTTTCCTTATAATAAGATCTCTTGATATGGGCCTTAGAAGTGCAGGTCAGATGCATGCTTCATTCACCTCTGATGGGAAACACATTGTCTCAATTAGTGAGGATTCAAATGTGTGTATGTGGAATTACACCGGCCAGGATAGGAATACTTCCAAAGCCAAGAAGATTTGGTCTTCTGAGAGTTTTCTATCCGACAAAGCCACAATTGCTATACCTTGGTGTGGCATTGAATCAAAGCCAGGATCACTCTTGTCGCCATCGCTGAAGCGTGACTTCAGTCAGAGGTTAACTCAGTCTTCACATGATCGTTCCTTCTTGAACCGCGGATTCCTGTCAGAGTTAGTCCCAAAGGTTTCTGCAACCTGGCCCGAGGAGACACTTCATGACTCAAGCCGAAGTTTTGTTACTCCTACAATGTGTAAGTCTGAGTACAAGTTCTTGAGAAGTGCTTGCAAGGGAATGTCTAATTCTCACTTGTGGGGTCAAGTGATTGTAACAGCAGGATGGGATGGACACATAAGAGTATACCAGAATTACGGGTTACCGGTTCGTGATTGA 2196 0.4208 MEEGDDQFYDTREELCSVSDVDSDGSEANESSSGNGYATSYHVWTNDLQSVHLRRLNFKRWMGLESDSDANLMMGDVELADSSCGVGRITVSCRALLRSLGVVDGSSQIVSNSLSNEICIIENRGVEDENLARTIKNLDDGTQYVVDKLGPDGTLSTLRVVGSDQSISLEEFQRNIMPTPQLRRHLQRDAENTRVPGIAKKKMKKDWLKKLGSVACVVHDQELDETDGKDFDSVDRSRKQRARVHSFRKRIKELTSLHTEQEFKAHKGVILTMKFSLDGKYLATGGEDGIVCVWKVVEGERSSKFEILDNDPSSTYFKMNSFSCLSPMDVDKEKLVNTDKLKRWSSSTCVIIPPKTFRILEKPLHVFHGHKGDILDLAWSKRGYVLSSSVDKTVRLWQVGIDKCLRVYSHNNYVTCVNFNPVNDKFFISGSIDGKVRIWEVLCCRVVDYINIREIVTAVCFRPDGKGTIVGTMIGNCRFYDIKDNHLQLDAQLILGGKKKTPGKRITSLQFSPNDPSKLLVASADSHVCILSGFDVVYKFKSRSFHLFLIIRSLDMGLRSAGQMHASFTSDGKHIVSISEDSNVCMWNYTGQDRNTSKAKKIWSSESFLSDKATIAIPWCGIESKPGSLLSPSLKRDFSQRLTQSSHDRSFLNRGFLSELVPKVSATWPEETLHDSSRSFVTPTMCKSEYKFLRSACKGMSNSHLWGQVIVTAGWDGHIRVYQNYGLPVRD 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0525 731 SMART WD40_4 547 588 IPR001680 GO:0005515
Lal23g0525 731 SMART WD40_4 360 398 IPR001680 GO:0005515
Lal23g0525 731 SMART WD40_4 442 481 IPR001680 GO:0005515
Lal23g0525 731 SMART WD40_4 488 532 IPR001680 GO:0005515
Lal23g0525 731 SMART WD40_4 256 295 IPR001680 GO:0005515
Lal23g0525 731 SMART WD40_4 683 723 IPR001680 GO:0005515
Lal23g0525 731 SMART WD40_4 401 440 IPR001680 GO:0005515
Lal23g0525 731 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 407 441 - -
Lal23g0525 731 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 441 IPR001680 GO:0005515
Lal23g0525 731 PANTHER WD REPEAT DOMAIN 44 2 730 IPR040324 -
Lal23g0525 731 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 367 399 - -
Lal23g0525 731 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 296 - -
Lal23g0525 731 Pfam WD domain, G-beta repeat 362 397 IPR001680 GO:0005515
Lal23g0525 731 Pfam WD domain, G-beta repeat 403 439 IPR001680 GO:0005515
Lal23g0525 731 Pfam WD domain, G-beta repeat 261 295 IPR001680 GO:0005515
Lal23g0525 731 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Lal23g0525 731 PRINTS G protein beta WD-40 repeat signature 385 399 IPR020472 -
Lal23g0525 731 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Lal23g0525 731 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Lal23g0525 731 Gene3D - 249 498 IPR015943 GO:0005515
Lal23g0525 731 SUPERFAMILY WD40 repeat-like 256 722 IPR036322 GO:0005515
Lal23g0525 731 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 407 IPR001680 GO:0005515
Lal23g0525 731 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 2 730 - -
Lal23g0525 731 Gene3D - 499 725 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0525 Lal-Chr23 8044037 8048371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0525 367 587 Miscellaneous Gene Families AT5G08390 25.991 1.98e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0525 - - gmx:100788374 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0525 23 8044037 8048371 Lal23g0525 23 8044037 8048371 ECH
Lal23g0525 23 8044037 8048371 Lal17g0582 17 4138366 4143175 ECH
Lal23g0525 23 8044037 8048371 Lal4g0507 4 3647965 3652840 ECH
Lal16g1130 16 7674844 7679244 Lal23g0525 23 8044037 8048371 LSH