Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0496 ATGAGTATTCCACAAACTCCAAACCCTTCTCCTTCACATTTATATCCACATGAAATTCAGCTTAAACTTTACCAAGCTTTCATATTCTCCATTCCAATACTCTTTACTATCATTCTAGTTCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCATCTCTCTCATCACCTTCTCTTCATATACTTCCTCAAACTACATATCATTATCCTTCACTAAGATTTCCCCTCTCTCTCCAAACTTATCGTTTAGATCATCTCACGGCACAATTTCTGGACAAACTTCCAAGAGTTTTATTTGATGACGATTTGAGAGCAAGGGATTCGTTATGTTGTGTTTGTTTGGGAGAATTTGAGTTGAAAGAAGAGTTGCTTCAGATTCCTCATTGCAAGCATGTGTTTCACATAGAATGCATACATAATTGGCTTCAATCAAACACTACATGTCCACTTTGTAGATGTTCCATTATTCCAACCACTACTACTAATAAGTTCCTTAGTACTACACCTTCTATTGTTTCATCACAACAAGGTGGTGTCATTTCAGTCTCTTCATCACATATCATATTATTGCCTCCTCAACTAGAAGATGAAGCAAGTGTTTCCTCAAATAATACTCATAATTTAGGGGAATGA 636 0.3616 MSIPQTPNPSPSHLYPHEIQLKLYQAFIFSIPILFTIILVLLFYLFYLKRRASSLSSPSLHILPQTTYHYPSLRFPLSLQTYRLDHLTAQFLDKLPRVLFDDDLRARDSLCCVCLGEFELKEELLQIPHCKHVFHIECIHNWLQSNTTCPLCRCSIIPTTTTNKFLSTTPSIVSSQQGGVISVSSSHIILLPPQLEDEASVSSNNTHNLGE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0496 211 Pfam Ring finger domain 111 153 IPR001841 -
Lal23g0496 211 SMART ring_2 111 152 IPR001841 -
Lal23g0496 211 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 3 168 - -
Lal23g0496 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 3 168 - -
Lal23g0496 211 SUPERFAMILY RING/U-box 90 162 - -
Lal23g0496 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 158 IPR013083 -
Lal23g0496 211 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0496 Lal-Chr23 7681836 7685981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0496 3 158 C3H Transcription Factor Family AT4G10150 42.308 4.85e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0496 K19039 - gmx:100806554 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0496 23 7681836 7685981 Lal23g0496 23 7681836 7685981 ECH
Lal15g1459 15 16810741 16813303 Lal23g0496 23 7681836 7685981 LSH