Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal23g0353 | ATGATTCAACCTCAAACCCATTTAAATGTAGCCGATAACAGCGGAGCCCGCGAATTGATGTGTATTCAAATTATAGGAGCTAGTAATCGGAGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATAAAGGAAGTTGTACCAAATACGCCTTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGCAGGAACGGTATCATAATACACTATAATGATAATGCTGCGGTCATCATCGATCAAGAAGGAAATCCAAAAGGAACCCGAATTTTTGGCGCAATCACTAGGGAATTGAGACAATTAAATTTCACTAAAATTGTTTCGCATCGGAGGTATTATAAGACGAGACTCTGGCATAGCTATATTATTTTTGAATAA | 402 | 0.3682 | MIQPQTHLNVADNSGARELMCIQIIGASNRRYAYIGDIVVAVIKEVVPNTPLERSEVIRAVIVRTCKELKRRNGIIIHYNDNAAVIIDQEGNPKGTRIFGAITRELRQLNFTKIVSHRRYYKTRLWHSYIIFE | 133 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal23g0353 | 133 | SMART | Ribosomal_L14_2 | 1 | 122 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal23g0353 | 133 | Gene3D | Ribosomal protein L14 | 1 | 119 | IPR036853 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal23g0353 | 133 | PANTHER | 50S/60S RIBOSOMAL PROTEIN L14/L23 | 1 | 115 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal23g0353 | 133 | ProSitePatterns | Ribosomal protein L14 signature. | 60 | 86 | IPR019972 | - | |
| Lal23g0353 | 133 | Hamap | 50S ribosomal protein L14 [rplN]. | 1 | 130 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal23g0353 | 133 | TIGRFAM | rplN_bact: ribosomal protein uL14 | 1 | 116 | IPR005745 | GO:0003735|GO:0006412|GO:0015934 | |
| Lal23g0353 | 133 | Pfam | Ribosomal protein L14p/L23e | 1 | 116 | IPR000218 | GO:0003735|GO:0005840|GO:0006412 | |
| Lal23g0353 | 133 | PANTHER | RIBOSOMAL PROTEIN L14B/L23E-RELATED | 1 | 115 | - | - | |
| Lal23g0353 | 133 | SUPERFAMILY | Ribosomal protein L14 | 1 | 117 | IPR036853 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal23g0353 | Lal-Chr23 | 4682977 | 4683378 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal23g0353 | 8 | 109 | Cytoplasmic Ribosomal Protein Gene Family | AT3G04400 | 37.736 | 1.03e-17 | 72.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal23g0353 | K02874 | - | cpap:5878436 | 212.616 |