Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0339 ATGGGTGACATTAATCTTTTACAAGGAAACTTCCCAAATAATGAGGATTTGAACATCAAGTCATGCATTGGAATGGAATTTGATTCTATCGAAAATGTGAGGGAGTTTTACAATTTCTTTGCAAAGAATAAAGGTCAACACAAAGTTAAAAGTGGTGCAAATGAAGAAGCTGAAGATAATGTTAGTCAAACAAAAAGAAAGTGTTCAACTCTTCGAACTGGTTGTCAGGCTTCACTTGTTGTTGCAAGAGGTACAGTAGAAAGTAATTGGGTTATAACATCATTTGTCAATGATCATAACCATATTATGGTTAGCCCAAGAAGTGTGTCCTATATGCGGTGTCATAAAAAGATGAGTGTTGCTGCAAAAAGTCTTGTTGAAAGATTTGAGGAAGAAGGCTTACCTACTGGAAAGGTAGTTGCAATTTTTAATAATGGTGAGTCGTCTTTCTCTCATAGAGATTGTTGGAATCACGTGAGAAATCTACGAAGAAAGAATTTAGATGCTGGGGATGCTCAAGCTGTTTTTGACTATTGTAAACTAAAGGAGACTGAAAATCCTAAGTTTTTCTATGCAATCCAATTGGACGATGATTCTCGGATGATGAGAAGAGATGGACCAAGACATATACTGGTAATTTTTCAAGCTAAAGGGGTTGTTCAAATTCCTGACCACTTTATTTTGAAACGTTGGACTAAGGAAGCTAACAAAGGTATTGAGGCTAGTTATATTGAAAATAATTTTGATGCTGAATTTACTACTTCAAAGATTGTACGAAGGATGCATGCTCAACAACAAGCAAGCATATTAGTTGATTTGGCTGAAGAGTCAGAGATGTATAAGTTTATTATTTCAGAATTGAGCAACACACATAAGTCAGCAATTATAATGAAAACAAGTTCACTAATTGTTTTGGAGTCAAGCCACACAATTGTGAATGAAACTGTCATACCAGAGGAAGTAACAGAAGCACCACATTTAATTATTGGAGACCCACATATATCACGTACAAAAGGAAGAAGAAAGGATGGAGAAAAGATTACTCAAAATTGTAGATTTAAGAGTGGTCTTGAAGTATCACTTATCAAGTCATCAATCAAAAGGAAGAAATGCACGAAGTGTGGAGAACATGGCCACAACAAAAAAACTTGTAGGAAAATGTTCTGTGTATAA 1173 0.3512 MGDINLLQGNFPNNEDLNIKSCIGMEFDSIENVREFYNFFAKNKGQHKVKSGANEEAEDNVSQTKRKCSTLRTGCQASLVVARGTVESNWVITSFVNDHNHIMVSPRSVSYMRCHKKMSVAAKSLVERFEEEGLPTGKVVAIFNNGESSFSHRDCWNHVRNLRRKNLDAGDAQAVFDYCKLKETENPKFFYAIQLDDDSRMMRRDGPRHILVIFQAKGVVQIPDHFILKRWTKEANKGIEASYIENNFDAEFTTSKIVRRMHAQQQASILVDLAEESEMYKFIISELSNTHKSAIIMKTSSLIVLESSHTIVNETVIPEEVTEAPHLIIGDPHISRTKGRRKDGEKITQNCRFKSGLEVSLIKSSIKRKKCTKCGEHGHNKKTCRKMFCV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0339 390 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 61 201 IPR031052 GO:0006355
Lal23g0339 390 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 208 347 IPR031052 GO:0006355
Lal23g0339 390 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 208 347 - -
Lal23g0339 390 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 61 201 - -
Lal23g0339 390 Pfam FAR1 DNA-binding domain 50 103 IPR004330 -
Lal23g0339 390 ProSiteProfiles Zinc finger CCHC-type profile. 370 386 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0339 Lal-Chr23 4380614 4382145 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lal23g0339 FAR1 7.1e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0339 - - lja:Lj5g3v1003540.1 228.794