Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0301 ATGGGAAGGGTGATCCGTGCTCAACGTAAGGGTGCTGGTTCAGTCTTCAAATCCCACACCCACCATCGCAAGGGTCCAGCAAGGTTCCGAAGCCTCGACTTCGGTGAACGAAACGGTTACCTCAAAGGTGTGGTCACTGACGTCATCCATGACCCTGGGCGTGGGGCCCCACTTGCTAAGGTGACATTCCGTCATCCTTTTAGGTATAAGAAACAGAATGAGTTATTTGTTGCTGCTGAAGGACTTTACAGTGGTCAATTCATATATTGTGGTAAGAAAGCGAACCTTGTTGTTGGTAATGTGTTGCCTCTTAGATCTATTCCTGAAGGAGCTGTTATTTGTAATGTTGAACATCATGTTGGTGATCGCGGTGTTTTCGCTAGGTGTTCTGGTGATTATGCTATTGTTATAAGTCATAATCCCGATAATGATACTTCTAGGATCAAGCTTCCATCAGGTTCAAAGAAGATTGTTCCAAGTGACTGTAGGGCCATGATTGGACAAGTTGCAGGCGGTGGGAGAACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCTTACCACAAGTTTAGGGTGAAGAGAAATTGCTGGCCCAAGGTTCGTGGTGTGGCTATGAATCCCGTTGAGCATCCTCATGGAGGAGGTAATCACCAGCACATTGGTCATGCCAGTACGGTTAGGCGTGACGCTCCTCCCGGACAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGACGTCTTAGGGGACAGGCTGCTTCAGCTGCTTCCAAAGCCGATAAGGTTTGA 783 0.4815 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYSGQFIYCGKKANLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGSKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAASAASKADKV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0301 260 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lal23g0301 260 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Lal23g0301 260 PANTHER RIBOSOMAL PROTEIN L2 1 259 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lal23g0301 260 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lal23g0301 260 PANTHER 60S RIBOSOMAL PROTEIN L8 1 259 - -
Lal23g0301 260 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lal23g0301 260 MobiDBLite consensus disorder prediction 210 230 - -
Lal23g0301 260 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Lal23g0301 260 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal23g0301 260 Gene3D - 90 169 IPR014722 -
Lal23g0301 260 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lal23g0301 260 Gene3D - 1 86 IPR012340 -
Lal23g0301 260 MobiDBLite consensus disorder prediction 241 260 - -
Lal23g0301 260 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Lal23g0301 260 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0301 Lal-Chr23 3438305 3440800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0301 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.248 0.0 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0301 K02938 - gmx:547677 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0143 16 856789 858572 Lal23g0301 23 3438305 3440800 PCT
Lal15g0102 15 711156 713059 Lal23g0301 23 3438305 3440800 PCT
Lal23g0301 23 3438305 3440800 Lal16g0143 16 856789 858572 PCT
Lal23g0301 23 3438305 3440800 Lal15g0102 15 711156 713059 PCT