Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0271 ATGGCGACGACAGGGTCACCGAACCACCCTACCGATGACACCGCCATTGATCCAACGCCGCTCCTCGAAAATTCCGGCAACTCCTCCGACGATTCCAACTCCGGCCGCCGATTCTCGCGGCGAGAAGGTTTGCGTCAAGCTGCTCGGTTCCTCCGTCAAGCGAGCGGGCAGAGGATGATGCGTGAGCCATCGATGGTGGTGAGAGAGACAGCGGCGGCGCAATTGGAGGAGCGGCAGAGTGATTGGGCTTATTCGAAACCCATGGTTGTTCTCGATATTCTATGGAACTTCGTGTTTGTCGTTACCATCGTTTCAGTGCTGGTTCTGAGTTTGAACGAAACTCCGATTGTGCCGTTGAGGTTTTGGCTTGTTGGTTATGCTCTGCAGTGCCTGCTTCATGTGGTTTGTCTTTGCATTGAGTATCGGAGACGGAGAAGGAACCGGAGGGAAGGGTCCAGCAACGCCGTAGCACAAGGCGGCGTTGGAGGCAGTGAGGATTTGAGCTCTGGTTCTATTGAAGGTTCTGGACAGCATGGTTTGGTGTCTCAATTGGATGAAGATAAAACAAGTATAGCGAAGTATTTGGAATCAACCAACACAATATTTTCATTTATTTGGTGGGTTGCTGGATTCTATTGGGTTTCAGCTGGTGGTGACAGTTATGCATACTCTTCCTCTGTTTTGATGTTTTATTTGTCGTTTTCTGTATTGTACTGGCCTGCATCGTTGGCATTGCCATTTGCTGTTGCCTTCCATGACGGGGCAACAAAAGGAGAAATTGAGCGGTTGTCAAAATTCAAATTCCGTAGAATTGAAAATGATGAGAAACATGCTGGTAATACTGAAGGACCTGCTGGAGGAATAATGACCGAGTGTGTGGCTGATTCACCTATTGAACGTGTTCTTTCAGAGGAAGATGCAGAATGTTGCATCTGTCTTTCAGAATATGATGATGGGGTTGAACTAAGACAACTTCAATGTGGTCACCATTTTCACTGTACCTGCGTCGATAAATGGCTGCATACTAATGCTACTTGCCCTCTCTGCAAGTATAACATCTTAAAAAGTACCAGTTATGATCATGAGGAAGTGTAG 1095 0.474 MATTGSPNHPTDDTAIDPTPLLENSGNSSDDSNSGRRFSRREGLRQAARFLRQASGQRMMREPSMVVRETAAAQLEERQSDWAYSKPMVVLDILWNFVFVVTIVSVLVLSLNETPIVPLRFWLVGYALQCLLHVVCLCIEYRRRRRNRREGSSNAVAQGGVGGSEDLSSGSIEGSGQHGLVSQLDEDKTSIAKYLESTNTIFSFIWWVAGFYWVSAGGDSYAYSSSVLMFYLSFSVLYWPASLALPFAVAFHDGATKGEIERLSKFKFRRIENDEKHAGNTEGPAGGIMTECVADSPIERVLSEEDAECCICLSEYDDGVELRQLQCGHHFHCTCVDKWLHTNATCPLCKYNILKSTSYDHEEV 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0271 364 SUPERFAMILY RING/U-box 299 356 - -
Lal23g0271 364 PANTHER TARGET OF ERK KINASE MPK-1 240 364 - -
Lal23g0271 364 PANTHER TARGET OF ERK KINASE MPK-1 3 234 - -
Lal23g0271 364 MobiDBLite consensus disorder prediction 152 174 - -
Lal23g0271 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 357 IPR013083 -
Lal23g0271 364 SMART ring_2 309 349 IPR001841 -
Lal23g0271 364 MobiDBLite consensus disorder prediction 1 42 - -
Lal23g0271 364 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Lal23g0271 364 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 240 364 - -
Lal23g0271 364 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 234 - -
Lal23g0271 364 CDD RING-H2_RNF111_like 308 352 - -
Lal23g0271 364 MobiDBLite consensus disorder prediction 1 33 - -
Lal23g0271 364 Pfam Ring finger domain 308 350 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0271 Lal-Chr23 2712445 2717195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0271 28 355 C3H Transcription Factor Family AT1G68070 41.573 1.91e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0271 - - gmx:100779757 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0271 23 2712445 2717195 Lal23g0271 23 2712445 2717195 ECH