Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0270 ATGGCATCTTCATCATCAGTTATTTACGATGTGCCATGGGTTGAGAAATACCGACCCAGCAAGGTCATCGACATTGTTGGTAACGAGGATGCTGTCTCTAGGCTCCAAGTCATTGCTCGTGATGGCAACATGCCCAACCTCATTCTCTCTGGTCCTCCTGGAACTGGGAAAACTACTAGCATTCTCGCTCTTGCACATGAGCTTCTCGGACCCAATTGCAAGGAAGCTGTTCTCGAACTAAATGCATCTGATGACAGAGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCGCAAAAGAAAGTGACGCTGCCTCCCGGCCGACACAAAATAGTAATACTGGATGAAGCTGACAGCATGACATCAGGAGCTCAGCAAGCCTTGAGAAGGACTATGGAGATATACTCGAATTCTACTCGTTTTGCTCTTGCATGCAACACATCGTCTAAAATTATTGAACCGATTCAGAGTAGATGTGCCATTGTGCGGTTTTCACGATTATCTGATCAAGAGATACTTGGTCGCCTCATGATAGTAGTTCAAGCTGAGAAGGTTCCATATGTTCCTGAGGGCCTTGAAGCCATCATTTTCACAGCTGATGGTGATATGAGGCAGGCATTAAATAACTTGCAAGCAACATACAGTGGATTCCAGTTTGTTAACCAAGCAAATGTTTTTAAGGTTTGTGACCAGCCACATCCATTGCATGTGAAGAATATGGTGCGCAATGTGATTGACGGGAATTTTGATGACGCTTGTTTGGGTCTCAAGCAACTGTATGATTTAGGATATTCACCAACCGATATCATCACAACACTTTTTCGTATAATAAAAAATTATGACATGGCTGAGTACCTGAAACTGGAATTTATGAAGGAAACTGGGTTTGCCCATATGAGAATTTCTGATGGAGTTGGTTCTTACCTTCAAATGTGTGGTTTGTTGGCTAAACTTTCTCTAGTTCGTGAAACAGCTAAAGCTGCTTAG 990 0.4273 MASSSSVIYDVPWVEKYRPSKVIDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIDGNFDDACLGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRISDGVGSYLQMCGLLAKLSLVRETAKAA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0270 329 SUPERFAMILY post-AAA+ oligomerization domain-like 232 323 IPR008921 GO:0003677|GO:0006260
Lal23g0270 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 230 IPR027417 -
Lal23g0270 329 CDD HLD_clamp_RFC 168 230 - -
Lal23g0270 329 SMART AAA_5 43 169 IPR003593 -
Lal23g0270 329 Gene3D - 6 168 IPR027417 -
Lal23g0270 329 CDD AAA 26 163 - -
Lal23g0270 329 Gene3D - 169 232 - -
Lal23g0270 329 PANTHER REPLICATION FACTOR C SUBUNIT 2 5 327 - -
Lal23g0270 329 Pfam Replication factor C C-terminal domain 233 318 IPR013748 -
Lal23g0270 329 Gene3D - 233 325 - -
Lal23g0270 329 Pfam ATPase family associated with various cellular activities (AAA) 47 165 IPR003959 GO:0005524|GO:0016887
Lal23g0270 329 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0270 Lal-Chr23 2696785 2700931 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0270 9 328 Core DNA Replication Machinery Family AT1G63160 91.875 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0270 K10755 - gmx:100781364 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0270 23 2696785 2700931 Lal23g0270 23 2696785 2700931 ECH