Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0256 ATGGCCTTTAGTGGGACCCAACAGAAATGCAAGGCTTGTGATAAAGTTGTTCATTTTGTGGAATCTGTATCTGCAGATGGTATTTCTTATCACAAGAACTGCTTCAGATGCAGCCATTGCAATGGAAACCTTGCGATGAGCAACTACTCATCCATGGATGGAACCTTGTACTGCAAGCCTCACTTTGAACAAGTTTACAAGGAAAATGGTGGCATGAAACTCCAATCATCTGCAAAGCCTCCAAAAGAGCTGACTAAGACACCCAGCAAACTCTCTGCCTTCTTCTCTGGGACTCAAGAGAAATGTTCAACATGCAAGAAAACTGTATATCCATTGGAAAAGTTAACTGTGGAAGGTGAGTTTTACCACAAATCATGCTTTAGATGCACACATGGAGGATGCTTTCTCACTCCTTCAACCTATGCTGCACTTGATGGATTTCTTTACTGCAAGCCTCACTTCTCTCAACTCTTCAAGGAAAAGGGAAGCTATAGTTATCTCTCCAAGACAGCTTCAATGAAGAAAACTGAACAACAACAACAACAACAACAACAAGCAGAAGCATCATCAGATTCAGAACCAAATGAGACAACAAAGGAAGAACAAGAGGCTGTGGTCACACAAGAGCAGTAA 633 0.4171 MAFSGTQQKCKACDKVVHFVESVSADGISYHKNCFRCSHCNGNLAMSNYSSMDGTLYCKPHFEQVYKENGGMKLQSSAKPPKELTKTPSKLSAFFSGTQEKCSTCKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLTPSTYAALDGFLYCKPHFSQLFKEKGSYSYLSKTASMKKTEQQQQQQQQAEASSDSEPNETTKEEQEAVVTQEQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0256 210 Gene3D Cysteine Rich Protein 96 166 - -
Lal23g0256 210 Gene3D Cysteine Rich Protein 4 73 - -
Lal23g0256 210 MobiDBLite consensus disorder prediction 170 192 - -
Lal23g0256 210 Pfam LIM domain 102 157 IPR001781 -
Lal23g0256 210 Pfam LIM domain 10 64 IPR001781 -
Lal23g0256 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 72 - -
Lal23g0256 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 127 - -
Lal23g0256 210 MobiDBLite consensus disorder prediction 170 210 - -
Lal23g0256 210 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lal23g0256 210 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lal23g0256 210 SMART lim_4 9 61 IPR001781 -
Lal23g0256 210 SMART lim_4 101 153 IPR001781 -
Lal23g0256 210 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 204 - -
Lal23g0256 210 MobiDBLite consensus disorder prediction 193 210 - -
Lal23g0256 210 ProSiteProfiles LIM domain profile. 100 160 IPR001781 -
Lal23g0256 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lal23g0256 210 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 166 - -
Lal23g0256 210 PANTHER OS06G0237300 PROTEIN 1 204 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0256 Lal-Chr23 2555500 2557633 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal23g0256 LIM 8.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0256 - K24413 gmx:100499865 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0256 23 2555500 2557633 Lal23g0256 23 2555500 2557633 ECH