Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0226 ATGTCTTCTCCTCATAATTCTTCTCCTGATAATGCTACACCCGACAACTCTACACCCGATGATTCTATTCCCGACAATTCAACACCCGACAACTCTATTCCTGACAACTCTACACCTGATAATTCCAAACCCAATAATTCTACACCTCATAACTCCACACCTGATAACGCTACACCTGATAATTCTACACCTGATAACGCTGATGCAAAACCTAATAGTTTCTCCACCGGATCAACATCAACATCAACAACACCACAGAAATCATTACCAAATGGAAAAGCAGCTTCAAGTGGTGGCAAGGATGACAACAAAGCAATGATTGGAGCTGCTGTGGGAGTAGTGTTCGTTCTTCTTATTCTAGTCATTATTTGTGTCATTTGGTCGAGGAAGAAGAAAAGAAAGCAAAAGTACTACTATGAAAAACCTCCTTCAGGGAATAACTACTACAACAGTGGAGCTTCACATCCAAATTGGTCAGGTCCTAATGGGGTACCCTCAGAGCATGTAATCAGAATGCACCAATCAGGTGGATGGGGTCCTGAAATGAACAACCCTCCATCATCAGGCCTTGTCCTACCCCTTAAGGGTGGTACCTTCACATATGAGGAATTAGCTGATGCTACAAATAACTTTGCTAATGAGAACATTGTAGGACAAGGTGGGTTTGGTTATGTCCATAAAGGAGTATTACATAATGGAAAAGAAGTTGCAGTGAAGAGTTTAAAATCAGGAAGTGGACAAGGAGAGAGAGAATTTCAAGCTGAGATTGACATCATTAGTCGTGTTCATCATCGTCATCTAGTGTCACTTGTTGGATACTGTATTTGGGGAGGACAGAGAATGTTGGTCTATGAATATGTTCCAAATCAAACTTTAGAACACCACCTTCATGGAAAGGGTGTGGCTACCATGGATTGGCCTACTAGAATGAGGATTGCAGTAGGATCTGCAAAAGGGCTAGCATATCTTCATGAAGATTGTCATCCTCGTATAATTCACCGTGATATTAAAGCTTCTAATGTCCTCCTTGATTCTAGCTTCGAAGCTAAGGTTGCTGATTTTGGATTGGCTAAGTTGACAACTGATAATAATACACATGTCTCAACACGTGTAATGGGAACATTCGGGTACCTTGCCCCAGAATATGCATCTAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGATCATGCTTTTAGAACTCATAACTGGGAAAAGGCCTTTGGATCTCACAAATACCATGGAGGATAGCTTAGTGGACTGGGCTCGACCATTGTTGAGTCGTGCTCTAGAGGGGGATGGAAACTTTGGAGAATTGGTGGATCCATTTTTGGAAGGAAATTACAATACCCAGGAAATGGCAAGGATGGTAGCTTGTGCTGCTGCAAGCATTCGTCATTCTGCAAAGAAACGTGCAAAAATGAGTCAGATAGTAAGAGTATTGGAAGGGGATGTGTCATTAGAAGACTTAAAAGAGGGAGTGAGGCCTACAAGTTCAGGGCAGAGCAGCACTTATACCCTTTCATCTGGGAGCCCAGAATATGATACAATGCAATACAATGCTGATATGATAAAGTTTAGACAACAAATACTGTTTAGTGATGAAAGCATCGAAATCTCTAGCAAAGAATATGGGCATCGTTAG 1653 0.4138 MSSPHNSSPDNATPDNSTPDDSIPDNSTPDNSIPDNSTPDNSKPNNSTPHNSTPDNATPDNSTPDNADAKPNSFSTGSTSTSTTPQKSLPNGKAASSGGKDDNKAMIGAAVGVVFVLLILVIICVIWSRKKKRKQKYYYEKPPSGNNYYNSGASHPNWSGPNGVPSEHVIRMHQSGGWGPEMNNPPSSGLVLPLKGGTFTYEELADATNNFANENIVGQGGFGYVHKGVLHNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIWGGQRMLVYEYVPNQTLEHHLHGKGVATMDWPTRMRIAVGSAKGLAYLHEDCHPRIIHRDIKASNVLLDSSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGIMLLELITGKRPLDLTNTMEDSLVDWARPLLSRALEGDGNFGELVDPFLEGNYNTQEMARMVACAAASIRHSAKKRAKMSQIVRVLEGDVSLEDLKEGVRPTSSGQSSTYTLSSGSPEYDTMQYNADMIKFRQQILFSDESIEISSKEYGHR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0226 550 Gene3D Phosphorylase Kinase; domain 1 189 286 - -
Lal23g0226 550 ProSitePatterns Protein kinases ATP-binding region signature. 217 239 IPR017441 GO:0005524
Lal23g0226 550 MobiDBLite consensus disorder prediction 1 102 - -
Lal23g0226 550 Pfam Protein tyrosine and serine/threonine kinase 214 413 IPR001245 GO:0004672|GO:0006468
Lal23g0226 550 Gene3D Transferase(Phosphotransferase) domain 1 287 497 - -
Lal23g0226 550 ProSiteProfiles Protein kinase domain profile. 211 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0226 550 MobiDBLite consensus disorder prediction 1 93 - -
Lal23g0226 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672|GO:0006468
Lal23g0226 550 PANTHER RECEPTOR-LIKE KINASE 193 548 - -
Lal23g0226 550 PANTHER RECEPTOR-LIKE KINASE 24 182 - -
Lal23g0226 550 SUPERFAMILY Protein kinase-like (PK-like) 191 484 IPR011009 -
Lal23g0226 550 SMART serkin_6 211 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0226 550 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 193 548 - -
Lal23g0226 550 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 24 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0226 Lal-Chr23 2108232 2115619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0226 75 539 Trihelix Transcription Factor Family AT1G70460 51.033 3.88e-155 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lal23g0226 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0226 - - gmx:100800744 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0177 16 1062671 1067736 Lal23g0226 23 2108232 2115619 LSH
Lal15g0052 15 375951 377372 Lal23g0226 23 2108232 2115619 LSH
Lal16g0177 16 1062671 1067736 Lal23g0226 23 2108232 2115619 PCT
Lal15g0052 15 375951 377372 Lal23g0226 23 2108232 2115619 PCT
Lal23g0226 23 2108232 2115619 Lal23g0226 23 2108232 2115619 PCT
Lal23g0226 23 2108232 2115619 Lal16g0177 16 1062671 1067736 PCT
Lal23g0226 23 2108232 2115619 Lal15g0052 15 375951 377372 PCT