Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0224 ATGTCTGTTGATTTTGACAATGTTTCAACAACTTCAGGAGGAGAAGCTAGTGTCTCTTCTTCTGGTAATCACCCAGAATCATCAAAACCCATCACCAAGAAAAAGAGAAACCTTCCAGGAATGCCAGATCCAGAGGCAGAGGTGATAGCTTTGTCTCCGAAGACCCTTATGGCTATAAACAGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTTCAGCTTCATAGAAGGGGACACAACTTGCCATGGAAACTGAGGCAGAGGTCAAGTAATGAGGTTAGGAAGAAGGTTTATGTGTGTCCTGAAGAAACTTGTGTTCATCATGATCCTTCTAGAGCTTTGGGGGATCTTACTGGGATCAAAAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCACTCTAAAGTTTGTGGAACCAGAGAGTATAAATGTGATTGTGGCACTTTATTTTCCAGGAGGGATAGCTTTATCACGCACAGAGCTTTTTGTGATGCCTTAGAAAAGGAGAGTGCAGGATCTCAGAGTGTTGTTGTAAAGGCTAATTCACGGTCCGATTCAAAAGTTATAACGGGAGATTCATTGCCACCTTCGCCCGCGACTACTACTCAATCAAATGCTGTGCAGACACAGAACCAAGAGTTGCCTGAAAATCCCGCACAAATCGTAGAAGTACAAGCTACTAGTGTTTTAAATGGGAGCTGTAGCAGCAGTGCCAACACAATAAACAATGGTTGTGCAACTACTAACAATAGTGTGTTCGGATGCTTGTTCGCTCCATCAACGACATCCACGAGTCTGCAATCTCAAACATCAGCGTTTACTGGCCTAATCAGGGCCATTGGATGTCTGGATCGTCCAACAGACCACCCCGATCCTTCATCCTCCGATCCAATTTCTCTCCGCCTTTTCAACAATCATGGCTCGTCAATTTTTGGAGCAGGAGGGCAGGAACAACATCAGTATGCCCCACCACCACAGCCAGCTATGTCGGCCACCGCATTGCTGCAGAAAGCTGCTCAAATGGGTACAGCTGCAACAAATGCCTCATTGCTTCAAGGGTTTGGCATTGTGTCATCTTCCACAGCATCATGCTCATCGAGTCAGCAACATAGTTTGCAATGGAATCGGCCGCGGCTTGTAGAACCATCGGAGAGTGCCACATTACCTGCAGGACTTGGACTTGGGCTTCCTTGTGATAGTGGCTCTGGACTAAAGGAATTGATGATAGGAACACCCTCCTCCTTTGGTCCTAAGCATACCACTCTCGATTTTCTAGGATTGGGGATGGCCGCTGGTGGAAGCCCCGGTGGAGGCTTATCTGCACTCGTCACATCTATCGGCGGTGGTCTGGATGTTACTGCAGCTGCATCCTTTGGTAATGGAGAGTTCCATGACAAGGTTATTGGGAGAAGCTCATGA 1488 0.463 MSVDFDNVSTTSGGEASVSSSGNHPESSKPITKKKRNLPGMPDPEAEVIALSPKTLMAINRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVRKKVYVCPEETCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTLFSRRDSFITHRAFCDALEKESAGSQSVVVKANSRSDSKVITGDSLPPSPATTTQSNAVQTQNQELPENPAQIVEVQATSVLNGSCSSSANTINNGCATTNNSVFGCLFAPSTTSTSLQSQTSAFTGLIRAIGCLDRPTDHPDPSSSDPISLRLFNNHGSSIFGAGGQEQHQYAPPPQPAMSATALLQKAAQMGTAATNASLLQGFGIVSSSTASCSSSQQHSLQWNRPRLVEPSESATLPAGLGLGLPCDSGSGLKELMIGTPSSFGPKHTTLDFLGLGMAAGGSPGGGLSALVTSIGGGLDVTAAASFGNGEFHDKVIGRSS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0224 495 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 494 - -
Lal23g0224 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 494 - -
Lal23g0224 495 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lal23g0224 495 SMART c2h2final6 103 133 IPR013087 -
Lal23g0224 495 SMART c2h2final6 62 84 IPR013087 -
Lal23g0224 495 SMART c2h2final6 138 158 IPR013087 -
Lal23g0224 495 Gene3D Classic Zinc Finger 116 195 - -
Lal23g0224 495 MobiDBLite consensus disorder prediction 1 27 - -
Lal23g0224 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Lal23g0224 495 Gene3D Classic Zinc Finger 62 109 - -
Lal23g0224 495 MobiDBLite consensus disorder prediction 209 234 - -
Lal23g0224 495 MobiDBLite consensus disorder prediction 1 45 - -
Lal23g0224 495 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0224 Lal-Chr23 2086580 2089787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0224 1 495 IDZ Gene Family AT5G66730 55.390 6.19e-169 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal23g0224 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0224 K25869 - gmx:100806404 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0181 16 1086490 1090101 Lal23g0224 23 2086580 2089787 LSH
Lal16g1850 16 17655865 17658862 Lal23g0224 23 2086580 2089787 LSH
Lal16g0181 16 1086490 1090101 Lal23g0224 23 2086580 2089787 PCT
Lal23g0224 23 2086580 2089787 Lal16g1850 16 17655865 17658862 PCT
Lal23g0224 23 2086580 2089787 Lal23g0224 23 2086580 2089787 PCT
Lal16g1850 16 17655865 17658862 Lal23g0224 23 2086580 2089787 PCT
Lal23g0224 23 2086580 2089787 Lal16g0181 16 1086490 1090101 PCT