Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0219 ATGGAATGTTGTCCATCTTTCAGATTGCTTTGGAAGGGAAATTGGTTCATACAAGAGAAAAGTTGCAAGATCCTTGCTTTAATACTTAGTGCCAGGCCAAAAAATCAGAATGGCATTGTTTCAAATGGAGAAACATCAAACTCAAAGAAGCCGTTTTCCACTATCGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGAACAGAAACAGGGAAAGATCTCCCAAATTGCAAGTGGTGCTCAGAACTTCGAGGATTCTCTCTCCTCCTATTCAACCCAGACTGGAATATCTGGATCAAATTTTGGCTTGAACTCTGATCAAAGCCTTTGCAAAGCCCCACCGTGTCCCATTTGGGTGTTGAAGAAACCTTCTCACCCTACTCGTGGAGTCCCAACTGCTGTCAATTGCCTTTCATCTATACTTAAGGAACCTGTGGTTAGGTCTTCTTTTGTTCAAGCAGATGGAGTCAAGTTGCTTGTGCCATTGATTTCTCCGGCATCCAACCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCTTATTATGAGCCTGCAATTGAATATTTGGCTACTTCAAGGGCCCTTCCGCGACTGATTGATGTTGTTAAGAGCTCTACAAAAGAGAAGGTTGTTAGAGTAGTTGTGTTGACTCTTAAAAACTTGCTGTCAAAAGGGACTTTGGGTGCTCAGATGGTTGACTTTCAGCTTCCACAAGTTGTTCAGAGTTTGAAAGCACAGGCTTGGAGTGATGAGGACTTGTTGGAGGCACTGAATTCCCTCGAAGAAGGGCTTAAGGATAACATTAAGAAACTTAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTGCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGATCGTATATTTTGGCGTGAAAATATTACCAACTTTGAAGAGAATGATTTCCAGATTCTAAGGGTTCTGATAACAATTTTGGACACATCCAGTGATCCAAGGACTCTGTCTGTTGCTTGCTTTGACCTTTCACAGTTCATTCAGCACCATCCTTCTGGGAGGCTCATCGTGGCGGACCTTAAAGCTAAGGAACGGGTAATGAAATTAATGAATCATGAGAATGCTGAGGTTACTAAAAACGCACTGCTCTGCATCCAACGACTTTTCTTAGGATCAAAGTATGCAAGCTTTTTGCAGGCTTAG 1203 0.4173 MECCPSFRLLWKGNWFIQEKSCKILALILSARPKNQNGIVSNGETSNSKKPFSTIDDVLIGLVKWLCEQKQGKISQIASGAQNFEDSLSSYSTQTGISGSNFGLNSDQSLCKAPPCPIWVLKKPSHPTRGVPTAVNCLSSILKEPVVRSSFVQADGVKLLVPLISPASNQQSIQLLYETCLCIWLLSYYEPAIEYLATSRALPRLIDVVKSSTKEKVVRVVVLTLKNLLSKGTLGAQMVDFQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDRIFWRENITNFEENDFQILRVLITILDTSSDPRTLSVACFDLSQFIQHHPSGRLIVADLKAKERVMKLMNHENAEVTKNALLCIQRLFLGSKYASFLQA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0219 400 SMART arm_5 143 188 IPR000225 GO:0005515
Lal23g0219 400 SMART arm_5 350 390 IPR000225 GO:0005515
Lal23g0219 400 SMART arm_5 189 230 IPR000225 GO:0005515
Lal23g0219 400 PIRSF V-ATP_synth_H 2 399 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lal23g0219 400 SUPERFAMILY ARM repeat 135 391 IPR016024 -
Lal23g0219 400 Pfam V-ATPase subunit H 277 389 IPR011987 GO:0000221|GO:1902600
Lal23g0219 400 Pfam V-ATPase subunit H 5 271 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lal23g0219 400 Gene3D - 4 279 IPR011989 -
Lal23g0219 400 Gene3D - 291 392 IPR038497 -
Lal23g0219 400 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 121 400 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lal23g0219 400 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 8 71 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lal23g0219 400 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 121 400 - -
Lal23g0219 400 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 8 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0219 Lal-Chr23 2031291 2040022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0219 5 400 Primary Pumps ATPases(2) AT3G42050 69.697 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0219 K02144 - gmx:100796479 605.52