Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0195 ATGGCTACTACTGATAATGGACAAGAACAAGAAAACCAAATTGGACACAAAGATCTAGCTCATAAGAGTCTCCTTCAGAATGATGCACTCTATCAGTATATACTTGAAACTAGTGTGTTTCCAAGAGAACATCAATGCTTGAAAGAGCTCCGCGAGATGACAGAAAAGCACCCTTGGAATCTTATGGCCACACCACCAGATGAAGGACAATTTCTGAGTATGTTGATTAAGCTAATCAATGCCAAGAACACAATTGAAATTGGTGTCTACACTGGTTACTCTCTTCTTTCCACTGCTCTAGCTCTTCCCCATGATGGAAAGGTGTTGGCTATGGATGTGAATCGTGAATATTATGAACTTGGATTGCCCATAATTCAAAAAGCTGGAGTGGAACACAAGATTGATTTCAGAGAAGGACTTGCACTTACTATTCTGGATGAAATGCTTAAAGATGAAAAGAAGAAGGGTTCATTTGATTTTGTGTTTGTGGATGCTGACAAGAACAATTACTTAAACTACCACAAAAGGGTGATAAAGCTTGTCAAAGTTGGGGGAGTGATTGTGTACGACAACACTCTATGGCGTGGATCTGTTGTGGCCCCACCTGATGCACCTCTTAAGGGTTATATTAAGCAATTTCGTGGTGATATTATGGAACTCAATAACTATGTTGCTAATGATGCTACAATTGAGATTTCTCAGATCCCTATTGGTGATGGTATTACCATGTGTCGCCGTATCATATGA 747 0.3963 MATTDNGQEQENQIGHKDLAHKSLLQNDALYQYILETSVFPREHQCLKELREMTEKHPWNLMATPPDEGQFLSMLIKLINAKNTIEIGVYTGYSLLSTALALPHDGKVLAMDVNREYYELGLPIIQKAGVEHKIDFREGLALTILDEMLKDEKKKGSFDFVFVDADKNNYLNYHKRVIKLVKVGGVIVYDNTLWRGSVVAPPDAPLKGYIKQFRGDIMELNNYVANDATIEISQIPIGDGITMCRRII 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0195 248 Gene3D Vaccinia Virus protein VP39 13 248 IPR029063 -
Lal23g0195 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Lal23g0195 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Lal23g0195 248 CDD AdoMet_MTases 85 189 - -
Lal23g0195 248 Pfam O-methyltransferase 37 247 IPR002935 GO:0008171
Lal23g0195 248 PANTHER CAFFEOYL-COA 3-O-METHYLTRANSFERASE 4 248 - -
Lal23g0195 248 PANTHER O-METHYLTRANSFERASE-RELATED 4 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0195 Lal-Chr23 1755728 1758892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0195 8 247 Monolignol Biosynthesis Gene Families AT4G34050 70.000 6.11e-130 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0195 K00588 - gmx:100795858 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0195 23 1755728 1758892 Lal23g0195 23 1755728 1758892 ECH
Lal15g1244 15 13903911 13908323 Lal23g0195 23 1755728 1758892 LSH
Lal16g1384 16 10352821 10355585 Lal23g0195 23 1755728 1758892 LSH
Lal15g1244 15 13903911 13908323 Lal23g0195 23 1755728 1758892 PCT
Lal23g0195 23 1755728 1758892 Lal15g1244 15 13903911 13908323 PCT
Lal23g0195 23 1755728 1758892 Lal16g1384 16 10352821 10355585 PCT
Lal23g0195 23 1755728 1758892 Lal23g0195 23 1755728 1758892 PCT
Lal16g1384 16 10352821 10355585 Lal23g0195 23 1755728 1758892 PCT