Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0189 ATGTCTCTCATAGAACAACAATCCCAAGATTCACAACAAAACTCTCCTTCAATCTTTGATACCCTTCTTTGTAGAGAACAATACATATTTGAAGAGGGAGAAGATTTTGAGACAAAAAATGATGATGGGTCTTCATTATCAGTGAGAAAGTTTCAATCTTTGCATTTAGTTTTGTTGGAGAATGATTTGTTATGGGAACATGAAGAGCTTGTGTACTTAATTTCAAAAGAGAGAGAAACCCATTTTACCCATTTGATTTTTGATGGATCCTTAGAGGAACATCGTTTTGAAGCTGTGAATTGGATTTCTAAAGTGTGTGCACATTTTGGGTTCTCTGCTTTGACCACTGTTCTTTCTGTGAACTACTTTGATAGGTTCATCACAAACCTCACGTTTCAGAATGATAAGCCATGGATGACACAACTTGTTGCTGTTGCTTGTTTATCTCTTGCTGCTAAAATGGAAGAGACCCATGTGCCACTCCTTTTGGACCTTCAAGTGGAGGAATCGAGGTTTGTGTTTGAAGCGAAGACTATACAGAGAATGGAGCTGATAGTGTTGTCGACTCTTAAATGGAGGATGAGTCCGGTGACCCCAATTTCCTTCTTTGAACACATTGTCAGAAGGCTTGGTTTAAAGAGTCGTTTGCATTGGGAGTTTCTGTGGCGTTGTGAGCGAATTCTTCTTAATGTCATTGCTGATTCAAGTGTTATGAGTTATCTCCCTTCTATGCTGGCTGCTGCTACAATGATTCATGTTATTAAGGAGATTGAACCTTTTAATGCAACTCACTACATTGATCAACTTCTGGGTTTACTCAAGATTAGTGAGGAACAAGTGAGCCAGTGCCATAAACTCATACTGAAACTATTAGTTTGCAATGAACGCATTCACAACCTTCGCCAGAAACGCAAGCGCCTATCTAGACCAAGTAGCCCAGGTGGTGTGATTGATGCATCTTTCAGCTGTGATAGCTCAAATGATTCATGGACCAATGAATCACTAGTCTCGCATTCACGGGAGCCATTGTTCAAGAAGAGCAGAGCTCAGGAGCAGAAGATGCGGTTGCCTTCTGTTAATCGTGTGTCTATTGATGTTCATAATATCCCCCGTTAA 1116 0.4023 MSLIEQQSQDSQQNSPSIFDTLLCREQYIFEEGEDFETKNDDGSSLSVRKFQSLHLVLLENDLLWEHEELVYLISKERETHFTHLIFDGSLEEHRFEAVNWISKVCAHFGFSALTTVLSVNYFDRFITNLTFQNDKPWMTQLVAVACLSLAAKMEETHVPLLLDLQVEESRFVFEAKTIQRMELIVLSTLKWRMSPVTPISFFEHIVRRLGLKSRLHWEFLWRCERILLNVIADSSVMSYLPSMLAAATMIHVIKEIEPFNATHYIDQLLGLLKISEEQVSQCHKLILKLLVCNERIHNLRQKRKRLSRPSSPGGVIDASFSCDSSNDSWTNESLVSHSREPLFKKSRAQEQKMRLPSVNRVSIDVHNIPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0189 371 SUPERFAMILY Cyclin-like 198 296 IPR036915 -
Lal23g0189 371 SMART cyclin_7 100 188 IPR013763 -
Lal23g0189 371 SMART Cyclin_C_2 197 325 IPR004367 -
Lal23g0189 371 CDD CYCLIN 94 187 IPR013763 -
Lal23g0189 371 Pfam Cyclin, C-terminal domain 197 302 IPR004367 -
Lal23g0189 371 Gene3D - 91 195 - -
Lal23g0189 371 Pfam Cyclin, N-terminal domain 73 195 IPR006671 -
Lal23g0189 371 PANTHER CYCLIN-D3-2 7 354 - -
Lal23g0189 371 SUPERFAMILY Cyclin-like 65 194 IPR036915 -
Lal23g0189 371 Gene3D - 196 285 - -
Lal23g0189 371 PANTHER CYCLINS 7 354 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0189 Lal-Chr23 1672243 1674788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0189 4 361 Core Cell Cycle Gene Families AT5G67260 48.509 2.52e-108 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0189 K14505 - gmx:100785030 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0132 4 824655 826647 Lal23g0189 23 1672243 1674788 ECH
Lal21g0217 21 1428124 1430020 Lal23g0189 23 1672243 1674788 ECH
Lal23g0189 23 1672243 1674788 Lal23g0189 23 1672243 1674788 ECH
Lal16g0233 16 1397711 1399795 Lal23g0189 23 1672243 1674788 LSH
Lal15g1257 15 14175067 14177312 Lal23g0189 23 1672243 1674788 LSH
Lal23g0189 23 1672243 1674788 Lal12g0409 12 2906137 2908184 PCT
Lal23g0189 23 1672243 1674788 Lal13g0405 13 2535872 2538092 PCT
Lal23g0189 23 1672243 1674788 Lal24g0325 24 2308314 2310804 PCT
Lal15g1257 15 14175067 14177312 Lal23g0189 23 1672243 1674788 PCT
Lal23g0189 23 1672243 1674788 Lal16g0233 16 1397711 1399795 PCT
Lal23g0189 23 1672243 1674788 Lal15g1257 15 14175067 14177312 PCT
Lal23g0189 23 1672243 1674788 Lal23g0189 23 1672243 1674788 PCT