Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0120 ATGTCTTCTGCCGGCGTCGACGGCGGTGTTAGCGGCGGAAACGCTTCTCCTCGCCAATATTTCTGCCACCAGTGCAACCGCACCGTCTCCATCATTCCCTCCTCCGATCTCTCTTGTCCCGATTGCAACAGCGGATTCATCGAAGAAATCGAAAACCCAATCCCTCAACATCAACATCACCCGTTCTCTTTCACCTATGAACTCGGCGGCGATGATCTTCCTTCAATCTTCGCCGGTCGATCTCCTTTCGGCGATGCCGATGCCTTCAATCCTCTCGTTTTTCTTCAAAATTATATCCAAACCCTAAGAGCTGGTGGCTCCAACGTTCAATTCGTCATCGATAACAACGCTTCGACGAATCTCAATCTCGGTGATTACTTTTTCGGCTCTGGTCTCGAGCAATTGATTCAGCAACTCGCAGAGAATGATCCCAACCGCTATGGTACCCCTCCGGCTTCAAAATCTGCCATCGAGGGGCTCCCGAATATCGCGGTAACCGAGGAATTGCTTGATTCCGATTTATCACAATGTGCAGTGTGTAAAGACACATTCGAGTTAAAGGAAATTGCTAAGCAGTTACCTTGTAAGCACATTTATCATAATGATTGCATTATGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTTTGTCGTTACGAGTTACCGACCGATGATCCTGAATATGAGCAGAGGGGTCAGGGCAGTGGAGGTGGAGGAGGGGGTGGGACCCAGCTGGATCAGAATGCTGGAGATAGCTCGCAGTTGCAGTCGCCGAGGGAGCTCAGGTTTAGGGTTTTGCCATGGCCTTTTAGGCAATTTGCTGGAGATACAAGCAATGTTGGCACCGGGAATGATGATAATAACAACACTGGTGGAGGATCAAATCGTGGAAGTAGGGGAAATCAGAATTTTGAGTCAGAAACCAGAGAAGAAGATCTGGATTGA 945 0.4857 MSSAGVDGGVSGGNASPRQYFCHQCNRTVSIIPSSDLSCPDCNSGFIEEIENPIPQHQHHPFSFTYELGGDDLPSIFAGRSPFGDADAFNPLVFLQNYIQTLRAGGSNVQFVIDNNASTNLNLGDYFFGSGLEQLIQQLAENDPNRYGTPPASKSAIEGLPNIAVTEELLDSDLSQCAVCKDTFELKEIAKQLPCKHIYHNDCIMPWLELHNSCPVCRYELPTDDPEYEQRGQGSGGGGGGGTQLDQNAGDSSQLQSPRELRFRVLPWPFRQFAGDTSNVGTGNDDNNNTGGGSNRGSRGNQNFESETREEDLD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0120 314 MobiDBLite consensus disorder prediction 275 302 - -
Lal23g0120 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 10 59 - -
Lal23g0120 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 84 254 - -
Lal23g0120 314 MobiDBLite consensus disorder prediction 240 258 - -
Lal23g0120 314 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Lal23g0120 314 SMART ring_2 177 217 IPR001841 -
Lal23g0120 314 MobiDBLite consensus disorder prediction 225 258 - -
Lal23g0120 314 SUPERFAMILY RING/U-box 156 224 - -
Lal23g0120 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 224 IPR013083 -
Lal23g0120 314 Pfam Ring finger domain 176 218 IPR001841 -
Lal23g0120 314 Pfam zinc-ribbon 19 50 IPR039525 GO:0061630
Lal23g0120 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 10 59 - -
Lal23g0120 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 84 254 - -
Lal23g0120 314 MobiDBLite consensus disorder prediction 274 314 - -
Lal23g0120 314 CDD RING-H2_RNF126_like 176 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0120 Lal-Chr23 1169382 1170326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0120 122 230 C3H Transcription Factor Family AT5G01980 51.376 1.14e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0120 - K11982 lang:109333167 464.922