Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0097 ATGGTCCTCCTTGCACCCAGACCCCAAGTGGTCTCGTGTTGTGCCTTTGACCCTTCCGTGGTCTTATTTAATCTTTTTGACCCAGACTTCCTCGCTATCCGTGCGTTCCTGTGGTCCTCCTTGCACCCAGGCCCCCAGTGGTCTCGTGTTGTGCTTTTGACCCTTTTGTGGTCTCATAATCTTTTGACCCAGAGTTCCTCGCTATTCACTTCCTCGCTATCCGTGCGTTCCTGTGGTCCTCCTTGCACCCAGACACCCCAGTGGTCTCGAGTTGTGCCCTTGACCCTTCCGTGGTCTTATTTAATCTTTTGGCCCAGAGTTCCTCGCTATCTGTGCGTTCCCGTGGTCATCCTTGCACCAAGACCCCCTAGTGTAAGAAGCATCACACTTGACACTCGTTATCTCTTTTATCACCAAGCTCGAGCCTATGCTTTGGGCGAGAAATGGCAAGTTGAGGCTGTTGACACTGGTTATAACTTTGAAGAGAAAAGAGATAATAGAGCTTTTCAAGAGCAAAGAGCCTTAGGACTCATCTTAGAACTTGAGAAGAGGTCTGAGTTTAGAGAGCAGTATAAGAAAGATTACCCGGAAAACAAATCTGTAGCTAATGTCAGTAAAGCTGGTGGTAGCAAATGGAAGTCAATCTCTGATGCTGAGAAAGCTACTTACGTTGCTAGGGCAATGAAGAAGAAAGAGGAGTATTATAGTAATATTTTGGCCTGCAATAAGAAATCCTTCAGAGGAAGATGA 750 0.468 MVLLAPRPQVVSCCAFDPSVVLFNLFDPDFLAIRAFLWSSLHPGPQWSRVVLLTLLWSHNLLTQSSSLFTSSLSVRSCGPPCTQTPQWSRVVPLTLPWSYLIFWPRVPRYLCVPVVILAPRPPSVRSITLDTRYLFYHQARAYALGEKWQVEAVDTGYNFEEKRDNRAFQEQRALGLILELEKRSEFREQYKKDYPENKSVANVSKAGGSKWKSISDAEKATYVARAMKKKEEYYSNILACNKKSFRGR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0097 249 Gene3D High mobility group box domain 184 228 IPR036910 -
Lal23g0097 249 CDD HMGB-UBF_HMG-box 185 234 - -
Lal23g0097 249 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 185 244 IPR031061 -
Lal23g0097 249 SUPERFAMILY HMG-box 185 240 IPR036910 -
Lal23g0097 249 Pfam HMG (high mobility group) box 185 237 IPR009071 -
Lal23g0097 249 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-LIKE 185 244 - -
Lal23g0097 249 SMART hmgende2 181 243 IPR009071 -
Lal23g0097 249 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 185 247 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0097 Lal-Chr23 954059 961139 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal23g0097 HMG_box 2.4e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0097 K25507 K22184 gmx:100305957 88.5817