Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0095 ATGTCGTGTTCTTCATCATCAGGATCAGAAGAAGACGGTGAGGGGTTCGACTCTTACCGGAAAGGAGGATACCACGCCGTCAGGATCGGCGATCAATTCGCCGGCGGGAGGTATATTGCTCAGAGGAAGCTTGGTTGGGGTCACTTCTCCACCGTATGGCTCGCTTTTGATACCACCACTTCCGTTGATGCTGATTTGACGTATGTTGCTCTCAAGATCCAGAAAAGTGCGGCTCAGTTTGTTCAAGCTGCCCTTCATGAGATTGAAATTCTTTCATCCATTGCTGATGGTGCCCCTTCAAATATAAAGTTTGTCATCCAATTGATTGACCACTTTAAGCATACAGGCCCTAATGGCCAGCACCTTTGCATGGTGCTTGAGTTTCTCGGCGATAGCTTGCTTCGTCTTATCAAATTTAGCCGTTACAAAGGCCTTCCATTGGATAGAGTTAGGGAGATTTGCAAATGCATTTTGATTGGTCTGGATTACTTGCATAGAGAACATGGTATTATCCACACAGACCTAAAACCTGAAAATGTTCTTCTGGTTTCGACTATTGATCCTGCCAAAGACCCTGTTAGATCTGAAATTGCCCCAATTCTAGAGAGGCCTGAGGGAAACATAAATGCTGGAGTTACAAATCTTATCGAGAAAAGGTTGAAAAGGAGAGCGAGGAGGGCAGTTGCTAAAATATCTGGAAGAAAAGATTCAATGGTGGAAACAGGAGAAGCTCCAAAGTCTGATAGAAATATTGATGGGGTAGATGTGAGATGCAAGATAGTAGATTTCGGAAATGCATGTTTCGCTGCTAAGCCGATTGCACAAGAAATTCAGACAAGGCAGTACAGGGCTCCTGAAGTTATATTGGAGGCTGGGTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGTATTGCTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCTCTGATGATGGAACTACTTGGAAAGATTCCACGAAAGATTGCTACTGCTGGAGCAAAATCTAAAGATTTTTTTGATAGACATGGAGATCTTAAGAGGATCAGAAGGCTAAAATTCTGGCCACTTAACAAGTTGTTGATTGATAGATATAAATTTCCAGAGAATGATGCTCATGAGTTTTCAGAGTTTCTTTTGCCACTTCTCGATTTTGCACCGGAAAAGCGACCAACTGCACAGCAGTGCCTACAACACCCATGGCTCAACAGCAAGGACTCCACTCCAAGTTAA 1281 0.4356 MSCSSSSGSEEDGEGFDSYRKGGYHAVRIGDQFAGGRYIAQRKLGWGHFSTVWLAFDTTTSVDADLTYVALKIQKSAAQFVQAALHEIEILSSIADGAPSNIKFVIQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKFSRYKGLPLDRVREICKCILIGLDYLHREHGIIHTDLKPENVLLVSTIDPAKDPVRSEIAPILERPEGNINAGVTNLIEKRLKRRARRAVAKISGRKDSMVETGEAPKSDRNIDGVDVRCKIVDFGNACFAAKPIAQEIQTRQYRAPEVILEAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKIPRKIATAGAKSKDFFDRHGDLKRIRRLKFWPLNKLLIDRYKFPENDAHEFSEFLLPLLDFAPEKRPTAQQCLQHPWLNSKDSTPS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0095 426 SMART serkin_6 38 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0095 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Lal23g0095 426 Gene3D Phosphorylase Kinase; domain 1 24 128 - -
Lal23g0095 426 ProSiteProfiles Protein kinase domain profile. 38 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0095 426 ProSitePatterns Protein kinases ATP-binding region signature. 44 72 IPR017441 GO:0005524
Lal23g0095 426 PANTHER OS07G0472400 PROTEIN 7 421 - -
Lal23g0095 426 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 7 421 - -
Lal23g0095 426 Pfam Protein kinase domain 39 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0095 426 Pfam Protein kinase domain 257 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0095 426 Gene3D Transferase(Phosphotransferase) domain 1 97 418 - -
Lal23g0095 426 SUPERFAMILY Protein kinase-like (PK-like) 32 421 IPR011009 -
Lal23g0095 426 CDD STKc_SRPK 27 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0095 Lal-Chr23 937333 941358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0095 4 419 EF-hand Containing Proteins AT5G22840 50.955 1.42e-161 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lal23g0095 Pkinase 1.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0095 K08832 - gmx:100811724 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0358 16 2165793 2170170 Lal23g0095 23 937333 941358 PCT
Lal15g0300 15 2014692 2018983 Lal23g0095 23 937333 941358 PCT
Lal23g0095 23 937333 941358 Lal16g0358 16 2165793 2170170 PCT
Lal23g0095 23 937333 941358 Lal15g0300 15 2014692 2018983 PCT