Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0078 ATGGATTCTCTTCTCTCTCTTCACAACCCAAACAACAACACCTTCCACATTCCGACCACCACCACCACCATCTCCGCCGCCGGCGAAACCACTTCCACCGGAGGAGGTTTAAAAGTACCGAAACCTGAACCTGAAGAAGACGATGTGGAAAAGCAACTTCAACTTTACTCTGACTTCTGTAGAGTCTCAAATCTCTTCCGTGAGGCATTCGGTAAAACCTTGCACCAACAATTCGGGAATGGTGATTCTGATTATGACCTTGATTCTAACCTTGTTGATGTGAAGGTTTCAGTTTCTGACCCAATTTTGGAGAATGGTGTTGGTGATTTGAATTTCCCGCTCTTAAATTCAAACCCTAATGCAGGTGCAATTGTTGCAGTGAGTAGACCTCACGGACAAGCGGTTGAGGTAACAATGACGCCGAGGCGAAAGCAGAGCCGAATGAAGGAGCTGGTGAGGGTGATGGATCTTGGAGTGAAGGATCAGGTGCATTTCAGGGAGGTTGTAAGAAAGACAAGGATTGTGTATGAGTCAATTCGTGTCGTGACATCTATCGAGGATGAGAAAAGAGTGGCTGCTGCTGTGGAAGAGAAGAAAAGAATGATTGCTGCCATGGCTGCTGCAGGTAAAGGAGAGCTAGAGGGAAGTGGCAGCAATGGCAGTAAGAGTTTTAGGAGGATGCGTCTTCGAGGGGACTTGAGAGCAGCCTCATTGATGAGGGATCGAGGTTTATGGCTGAACCGCGATAAGCGAATAGTTGGGGCGATTCCAGGTATAGACGTTGGTGATGTTTTCTTGTTTAGGATGGAATTGTGTGTTCTTGGGTTGCATGGTCAGATACAAGCTGGGATTGATTACCTTCCTAGTAGCATGAGCTCCAATGGCGAGCCAATAGCTACTAGTGTTATTGTTTCGGGTGGTTACGAGGATGACTTGGATGATGGTGAAGTTATTGTATACACGGGTCAAGGTGGGCAAGAGAAAAATTCTTATAGGCAAGTTTCTCATCAGAAGTTGGAGGGAGGGAACCTTGCACTGGAAAGGAGTATGCATTATGGGATTGAGGTGCGGGTCATTCGAGGGGTGAGGTACGAAGGAAGTGCATCGTCGTCTGGTAAGGTTTATGTTTATGATGGATTGTATAAGATTGTTGATTGCTGGTTTGATGTGGGGAGGTCGGGTTTTGGAGTTTATAAGTATAAACTTCGGAGAATTGAAGGGCAAGAGAAGATGGGTAGTGCTATTCTTAAAGAAGCCAGGGATATTAGGAGGAGTGGGATTGATTTCAATCCCATGCATTGTCTCTCTGTAGATATTTCGAACGGTAAGGAGAATTTCCCTATCCGGCTTTTTAATGACATAGATGATAATCAGGATCCTCTTTGTTTTGAGTATATTACCAAGACTACTTTTCCTCAATTTGTGTTCCATCAAAGTGGGAAGGCCACTGGTTGTGATTGCGTGGACGGTTGTGCTCATGACTGCTTTTGCTTTATGAAAAATGGAAGTGAGTTTCCGTATAATCAACATGGGGTTCTCGTCCGAGGGAAGCCTTTGATTTTTGAATGTGGACCATTTTGCGGTTGTCCTCCCCATTGTCGCAACCGTGTTACACAAAAGGGGCTGCAGAATAGGTTGGAAGTGTTTAGGTCTACACAGACAGGTTGGGGAGTTAGGTCCTTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAGTATGCAGGGGTTGTTTTGACTAGGGAGCAAGCACAAATTTTGACAATGAATGGTTCTGACTCGTCGATACATCCTAATCAATTTTCTCAGAGGTGGGCAGAATGGGGGAATATATCTCAGGTATACTCTGATTATGCCCGTCCATCATATCCATCAGTTCCTCCTTTAGATTTTTCTCTTGATGTCTCAACAATGAGGAATGTTGCTTGCTATATGAGCCATAGTTCAACCCCAAATGTGTTTGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACACAATGATATTTGCGATGGAGAACATCCCTCCAATGAGAGAGCTCAGCATTGATTATGGGGTAGCTGACGAGTGGACGGGCAAGCTCTCCATATGCAACTGA 2106 0.4482 MDSLLSLHNPNNNTFHIPTTTTTISAAGETTSTGGGLKVPKPEPEEDDVEKQLQLYSDFCRVSNLFREAFGKTLHQQFGNGDSDYDLDSNLVDVKVSVSDPILENGVGDLNFPLLNSNPNAGAIVAVSRPHGQAVEVTMTPRRKQSRMKELVRVMDLGVKDQVHFREVVRKTRIVYESIRVVTSIEDEKRVAAAVEEKKRMIAAMAAAGKGELEGSGSNGSKSFRRMRLRGDLRAASLMRDRGLWLNRDKRIVGAIPGIDVGDVFLFRMELCVLGLHGQIQAGIDYLPSSMSSNGEPIATSVIVSGGYEDDLDDGEVIVYTGQGGQEKNSYRQVSHQKLEGGNLALERSMHYGIEVRVIRGVRYEGSASSSGKVYVYDGLYKIVDCWFDVGRSGFGVYKYKLRRIEGQEKMGSAILKEARDIRRSGIDFNPMHCLSVDISNGKENFPIRLFNDIDDNQDPLCFEYITKTTFPQFVFHQSGKATGCDCVDGCAHDCFCFMKNGSEFPYNQHGVLVRGKPLIFECGPFCGCPPHCRNRVTQKGLQNRLEVFRSTQTGWGVRSLDLIHAGAFICEYAGVVLTREQAQILTMNGSDSSIHPNQFSQRWAEWGNISQVYSDYARPSYPSVPPLDFSLDVSTMRNVACYMSHSSTPNVFVQFVLYDHNNLMFPHTMIFAMENIPPMRELSIDYGVADEWTGKLSICN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0078 701 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 40 698 - -
Lal23g0078 701 MobiDBLite consensus disorder prediction 1 47 - -
Lal23g0078 701 ProSiteProfiles SET domain profile. 544 688 IPR001214 GO:0005515
Lal23g0078 701 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 40 698 - -
Lal23g0078 701 SUPERFAMILY PUA domain-like 235 417 IPR015947 -
Lal23g0078 701 Pfam SAD/SRA domain 253 408 IPR003105 -
Lal23g0078 701 SMART preset_2 436 528 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal23g0078 701 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 45 701 IPR025794 GO:0016571
Lal23g0078 701 SMART G9a_1 249 408 IPR003105 -
Lal23g0078 701 Pfam Pre-SET motif 439 536 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal23g0078 701 Pfam SET domain 555 688 IPR001214 GO:0005515
Lal23g0078 701 MobiDBLite consensus disorder prediction 1 32 - -
Lal23g0078 701 Gene3D - 251 412 IPR036987 -
Lal23g0078 701 Gene3D SET domain 413 701 IPR046341 -
Lal23g0078 701 ProSiteProfiles YDG domain profile. 254 404 IPR003105 -
Lal23g0078 701 ProSiteProfiles Pre-SET domain profile. 483 541 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal23g0078 701 SMART set_7 544 694 IPR001214 GO:0005515
Lal23g0078 701 SUPERFAMILY SET domain 430 700 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0078 Lal-Chr23 721721 723826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0078 230 690 Su(var)3-9 homologs AT5G04940 40.638 2.06e-106 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal23g0078 SAD_SRA 9.6e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0078 K11420 - gmx:100785015 916.761