Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0073 GTGAAACTCGGCACAACGGTAAGACCGTGTACATCTACTCTTTTCGAGGGTCCATATACTAATGCAAAGATGAGTTCCTTCTCCATCACAAGGAAGAAGACACCATTCCAGAAGCATAGAGAAGAGGAGGAGGCGAAGAAGAAGAGAGCAGAAGACGAGACTGCTCGCTTATATGCCGAGTTTGTGGAGTCATTTCAGGGGGACAATGCTCCTGGGTCAAAGACTTTTGTTCGTGGAGGAACAATTAATCCCAATGACAAATTGAAAGATGACATAGACGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTACCTTCTTTTCTACCCCCTCCATTGGCAACCAAGGGGAAGGAACCTGAAAGGAAAAAAGAGGAGGAGAAGCCAAAGGAGAAGGAGAAAGGAAAGTCAAGGAACATTGACCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGAACGTGACCACTATCGTGATGGGCGCATTGTAGAACATTCTATTTCGAGCCGCTTTGACGAACTGCCAGATGACTTTGATCCCAGTGGGAAACTTCCGGGATCATTTGATGATGTTGATCCACAAACAACAAATCTTTATGTTGGAAATCTCTCACCCCAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGTTTTGTAGCTTTCATGAACAGAGCTGACGGGCAGGCTGCTAAAGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGCTGGGGAAAGTCTGTTGCCCTCCCATCGCAAGCACTGCCTGCACCCCCACCTGGGCACATGGCCATCAGGAGTAAGGAGGGTAATACTGTGATCTTATCTGGCCCATCCGGTTCAGCAGTAACTTCTGTGCCTAATCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGACATAATGGTTACACCTCCTGAGGATGACCATCTAAGGCATGTAATTGATACTATGGCTTTGTATGTTCTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAATTTCTTGTTTGTTCTTGGCTCAAAGGAACATACCTACTATGTTTGGAGACTTTACTCATTTGCTCAGGGTGATGCTCTTCAAAGATGGCGGACTGAACCTTTCATCATGATAGCGGGTAGTGGAAGATGGATTCCGCCCTCTTTGCCAACAGCTAAAAGTCCAGAACATGAAAAGGAGTCTGGTCTCACACATGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTAACTGATGCACAGAGGGATGAATTTGAGGATATGCTCCGTGCTTTAACATTGGAGAGGAGCCAGATAAAAGTGGCTATGGGGTTTTCTTTGGACAATGCTGATGCAGCTGGTGAGATTGTTGATGTTTTAACCGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTTTCTGATATTCTTCATAATAGTAGTGCTCCTGTCAGAAATGCATCAGCATATCGCACAAAGTTTGAAGCAACGTTACCTGACATAATGGAGAGTTTTAATGACCTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTACGAGCCACTTTCCTTCGCTCTGGGAACTCTGGCGTGATACTTTTCCATTCCATATGTGGTGATGCACCTGAGGTTGAGCAGGTCATTTCCGAGGATATGGTTATCAGTGGCAAAACCAACCCAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAACGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTTGAAAGGCGTTGCCGACACAATGGGTTGTCGCTTGTTGGTGGTAGAGAAATGATGGTTGCTCGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGGGGCTATGAACTAGATGATGAATTGAAGTATACCCAAAACCAAACAAATTCTGGGAAATATCCGAGCAGTTGTCGAGAAACAAGCACTGAGCCAGAAACAATGGGATTATCTGCTTGGAATCGCTATGGTGATGATTCGCAGTCACAAGGCAAAGGGCCTGTACCTTTAGTGCCAACCCTTTCTGTTCCACAGCCTGAAATAAAAGCCTTCACAAAAAAGGAGAAGAGTGATCCGGTTTTGCCGGCCTCTAAATGGGCTCGGGAGGATGACGAAAGTGATGATGAGCAAAGAAGTGGAAAGAATCTTGGGTTAAGCTACTCATCTTCTGGTAGTGAGAATGCAGATGATGGTCTTATTAGAGCTGATGAATCAGAGTCTGCTGTTAATACGAGATTATCAGCTCATGCTGACAGTGGAATGAATGAGGAGCAAAGGCAAAAGCTGAGACGCATGGAGGTTGCTTTAATCGAGTATCGTGAGTCTCTTGAAGAAAGAGGGATTAAAAATTTGGAGGAAATTGAGAATAAAGTTGCTACACACCGGAAACGACTGCAAGTGGAGTGTGGGTTATCAGATTCTGGTGAAGATGGTCTAGGCAATAAAAGAACATCTTCAGAGAGGAGGGATAGGCATGATGTCCCAAGGAAGCGGCACCGCAGCCATAGTCCAAGCAATAGCCCACAGCAGAAATTATCAGGCAAAGTCAGAGATAGGGAACATGATTTAGAAAGGGACCGAGACAGACATAGAGATAGAAGTCGTGATTTTGATAGCGATAGGGGAAGGGACCGGCACCGGGAAAAGAGTGGAAGCAGAGAGAGGGAGGATCATGATAAGGAGAGAGGCAGGGACCGGGACAGGAGAAGACGGGTCAGATAA 2976 0.4533 VKLGTTVRPCTSTLFEGPYTNAKMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDIDGEKSKDGVSGPKKGSRYVPSFLPPPLATKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQERDHYRDGRIVEHSISSRFDELPDDFDPSGKLPGSFDDVDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGSAVTSVPNQNSELVLTPNVPDIMVTPPEDDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDALQRWRTEPFIMIAGSGRWIPPSLPTAKSPEHEKESGLTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKVAMGFSLDNADAAGEIVDVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVILFHSICGDAPEVEQVISEDMVISGKTNPDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYTQNQTNSGKYPSSCRETSTEPETMGLSAWNRYGDDSQSQGKGPVPLVPTLSVPQPEIKAFTKKEKSDPVLPASKWAREDDESDDEQRSGKNLGLSYSSSGSENADDGLIRADESESAVNTRLSAHADSGMNEEQRQKLRRMEVALIEYRESLEERGIKNLEEIENKVATHRKRLQVECGLSDSGEDGLGNKRTSSERRDRHDVPRKRHRSHSPSNSPQQKLSGKVRDREHDLERDRDRHRDRSRDFDSDRGRDRHREKSGSREREDHDKERGRDRDRRRRVR 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0073 991 MobiDBLite consensus disorder prediction 798 813 - -
Lal23g0073 991 PANTHER RNA PROCESSING PROTEIN LD23810P 24 986 - -
Lal23g0073 991 ProSiteProfiles SURP motif repeat profile. 358 401 IPR000061 GO:0003723|GO:0006396
Lal23g0073 991 SUPERFAMILY Surp module (SWAP domain) 332 412 IPR035967 GO:0003723|GO:0006396
Lal23g0073 991 Coils Coil 40 60 - -
Lal23g0073 991 MobiDBLite consensus disorder prediction 31 52 - -
Lal23g0073 991 Gene3D - 120 292 IPR012677 -
Lal23g0073 991 MobiDBLite consensus disorder prediction 64 145 - -
Lal23g0073 991 MobiDBLite consensus disorder prediction 735 845 - -
Lal23g0073 991 Coils Coil 840 860 - -
Lal23g0073 991 MobiDBLite consensus disorder prediction 440 464 - -
Lal23g0073 991 SMART 558neu5 473 608 IPR006569 -
Lal23g0073 991 CDD RRM_SR140 208 291 IPR035009 -
Lal23g0073 991 Gene3D - 466 613 IPR008942 -
Lal23g0073 991 SMART cwf21_2 839 888 IPR013170 -
Lal23g0073 991 MobiDBLite consensus disorder prediction 767 797 - -
Lal23g0073 991 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 290 IPR000504 GO:0003723
Lal23g0073 991 MobiDBLite consensus disorder prediction 34 52 - -
Lal23g0073 991 MobiDBLite consensus disorder prediction 876 991 - -
Lal23g0073 991 Pfam Surp module 356 408 IPR000061 GO:0003723|GO:0006396
Lal23g0073 991 Gene3D Surp module 344 413 IPR035967 GO:0003723|GO:0006396
Lal23g0073 991 SUPERFAMILY RNA-binding domain, RBD 202 297 IPR035979 GO:0003676
Lal23g0073 991 MobiDBLite consensus disorder prediction 122 145 - -
Lal23g0073 991 ProSiteProfiles SAP motif profile. 659 693 IPR003034 -
Lal23g0073 991 ProSiteProfiles CID domain profile. 466 611 IPR006569 -
Lal23g0073 991 Pfam CID domain 473 601 IPR006569 -
Lal23g0073 991 MobiDBLite consensus disorder prediction 84 103 - -
Lal23g0073 991 SMART surpneu2 356 410 IPR000061 GO:0003723|GO:0006396
Lal23g0073 991 MobiDBLite consensus disorder prediction 931 984 - -
Lal23g0073 991 PANTHER - 24 986 - -
Lal23g0073 991 SUPERFAMILY ENTH/VHS domain 470 608 IPR008942 -
Lal23g0073 991 SMART rrm1_1 210 286 IPR000504 GO:0003723
Lal23g0073 991 MobiDBLite consensus disorder prediction 436 464 - -
Lal23g0073 991 Gene3D - 839 890 - -
Lal23g0073 991 Pfam cwf21 domain 840 884 IPR013170 -
Lal23g0073 991 MobiDBLite consensus disorder prediction 711 730 - -
Lal23g0073 991 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 283 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0073 Lal-Chr23 645405 665329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0073 206 286 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.56e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0073 K12842 - gmx:100776093 1611.28