Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0069 ATGGCCATGCTTTTGAGAAAACTATGCGCTTCTATGCCATCCTCATCGTCAAAGCGATCCTCCGATGATTCGCCGCCGTCAACCACCTCCGGAAATTCACCTCCGCCGCATCTCGGCGCATTCTACTATCTCCCTGACGAAATATTGACGCAAATTCTGCGTCTATTGGGCCCTAAAGACGCTGCTAAACTTTGCGTCCTTTCCAAGTTATGGCGATATATCATCTCTGATAATGATCTATGGATTCATTTTCTTCAGAATCATTACCCTGATCCTTGGGACTCCGTTCTCTTCGCTGAGACTAATTTCAGCTCCGGTTACCCTCTTCCGGCCACTGCTGCTGAGATGTCTCATCTGTCATTCAGGAATGTCTACGCCCAACGTGCACAACTTCCAAGTTCTGTTATCATTGATGGTGGTTCTGGCTATTGCAAATTTGGTTTGAGTAATGACGCGTTTCCATCGGGGCGATCTGCAACCTTTCTGGAATTTGGTAATGTGGAAACACCAATGTATACTAGACTTCGACATTTCTTTGGGACTATTTATAACAGGATGCAGGTCAAGCCAAGTTCTCAACCAGTTATTGTTTCTATACCAATATGCCACTATGATGATACTGAAACAGCCAAAGCTTCAAGACGGCAGCTGAAAGAAGCAATCTATTCTGCTCTGTTTGATATGAATGTTCCTGCTGTTTGTGCTCTCAATCAGGCAACTCTAGCTCTGTATGCAGCAAAGCGAACTTCTGGAATAGCTGTTAACATAGGCTTTCAAGTCACATCTGTAGTTCCAATTTTAAACGGCAAAGTGATGCGTAATGTGGGTGTGGAGGTTGTGGGGCTAGGAGCACTAAAACTTACCGGATTCCTTAAAGAACAAATGCAGCAGAACAACATATTTTTTGAATCATTGTACACTGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCTGCTGATTATGAAGTTGAGCTGTCAAAAGATACAGAAGCATCATTTGAAGCTTTTGGAGAAGGATGGTTTACTCTTTCAAAAGAGCGGTTTCGAACAGGGGAGATCTTATTCCAGCCACGTCTTGCTAGGGTGCGAGCAATGGGTTTGCACCAGGCTGTTGCTCTTTGTATGGACCATTGCCATGCTGCTGAATTAGATGGCGACGGTGATTGGTTTAAGACTGTTGTTTTATCAGGGGGAACTGCATGTTTACCAGGTTTGGCAGAAAGGTTAGAAAAGGAACTCCATGCCTTATTTTCTCCTGAGGTGTCAAATGGAATTACAGTCATACCTCCTCCATATGGTGTGGATACAGCATGGTTTGGAGCAAGGGCTATCGGCAATGTGAGTACCTTTCCTGGTCCCTGGTGTACAACGAAGAAGCAGTTCCGTCAGAAGTATAAAGTCAACCGCATATGGTGA 1419 0.4447 MAMLLRKLCASMPSSSSKRSSDDSPPSTTSGNSPPPHLGAFYYLPDEILTQILRLLGPKDAAKLCVLSKLWRYIISDNDLWIHFLQNHYPDPWDSVLFAETNFSSGYPLPATAAEMSHLSFRNVYAQRAQLPSSVIIDGGSGYCKFGLSNDAFPSGRSATFLEFGNVETPMYTRLRHFFGTIYNRMQVKPSSQPVIVSIPICHYDDTETAKASRRQLKEAIYSALFDMNVPAVCALNQATLALYAAKRTSGIAVNIGFQVTSVVPILNGKVMRNVGVEVVGLGALKLTGFLKEQMQQNNIFFESLYTVRTLKEKLCYVAADYEVELSKDTEASFEAFGEGWFTLSKERFRTGEILFQPRLARVRAMGLHQAVALCMDHCHAAELDGDGDWFKTVVLSGGTACLPGLAERLEKELHALFSPEVSNGITVIPPPYGVDTAWFGARAIGNVSTFPGPWCTTKKQFRQKYKVNRIW 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0069 472 PANTHER ACTIN-RELATED PROTEIN 8 93 468 - -
Lal23g0069 472 SMART fbox_2 44 84 IPR001810 GO:0005515
Lal23g0069 472 MobiDBLite consensus disorder prediction 10 28 - -
Lal23g0069 472 Gene3D - 36 107 - -
Lal23g0069 472 SUPERFAMILY F-box domain 30 125 IPR036047 GO:0005515
Lal23g0069 472 MobiDBLite consensus disorder prediction 10 36 - -
Lal23g0069 472 ProSiteProfiles F-box domain profile. 38 84 IPR001810 GO:0005515
Lal23g0069 472 Pfam Actin 181 458 IPR004000 -
Lal23g0069 472 SMART actin_3 132 462 IPR004000 -
Lal23g0069 472 CDD NBD_sugar-kinase_HSP70_actin 135 279 - -
Lal23g0069 472 Pfam F-box-like 43 83 IPR001810 GO:0005515
Lal23g0069 472 Gene3D - 175 462 - -
Lal23g0069 472 Gene3D - 239 437 - -
Lal23g0069 472 PRINTS Actin signature 126 135 IPR004000 -
Lal23g0069 472 PRINTS Actin signature 176 194 IPR004000 -
Lal23g0069 472 PRINTS Actin signature 241 260 IPR004000 -
Lal23g0069 472 SUPERFAMILY Actin-like ATPase domain 248 459 IPR043129 -
Lal23g0069 472 SUPERFAMILY Actin-like ATPase domain 134 254 IPR043129 -
Lal23g0069 472 PANTHER ACTIN 93 468 IPR004000 -
Lal23g0069 472 Gene3D Actin; Chain A, domain 4 282 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0069 Lal-Chr23 599277 607637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0069 181 455 Cytoskeleton Gene Families AT3G12110 33.099 9.07e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0069 K16616 - gmx:100804254 700.279