Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0067 ATGGACTCTGAAACCAATGATAAGAACACTGTCTTCAGAAAACTAAAGGCCAAGCCCCAAAATAAGATGTGTTTTGATTGCAATGCGAAGAACCCTACTTGGGCATCAGTCACATATGGGATCTTTCTCTGCATTGATTGCTCCGCTTTTCATCGCAGTCTCGGCGTCCACATCAGTTTTGTCAGGCAAGCCTTATCTACGAATTTAGACTCATGGAGCCCCGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGCGCACAGGTTTTCTTTAAGCAGCATGGTTGGACTGATGGTGGTAAAACAGAGGCAAAGTACACATCCAGAGCTGCTGAGTTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGCAGGTGTTCCATCCTCACCTTTTATTTCTCAGCCTGCTCAAGGGGCTAATGAACTTCCTGAAGTCAAGACCAATGAAGCACCAAAACAGAACACTGTGGAGAAGCCTGAAAAGCCTAAGAGCACTTCTTCACCTAGAGCTTCGTACACAGCAGTTTCCAGTACTGTCAAGAAGCCTATTGGTGCTAAAAAACCTGGGAAGAGTGGGGGACTTGGTGCCCGTAAACTCAGTAAAAAGCCAAGTGAGTCTCTCTATGAGCAAAAGCCTGAAGAAGCACCTTCTCCGGTAGTTACATCATCAACAAACAACAATTTGTCTGATGGGCCATCTTTGACATCTCGGTTTGAGTATGTAGAAAATGTTCAATCATCTGAGTTCAATTCTGGAGGTTCAAATGCAATTGGTCATGTCTCTGCTCCAAAGTCAACAAGCTTCTTTTCAGATTTTGGAATGGATAGTAGCTTTCCAAAGAGATCTGGGCCAAGCTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCGAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGACCAGGACAAAGCAGATATGGAGGCTAAAACTACACTGTCAAAGTTTTCAGGTTCAGCTGCCATCTCTAGTGCTGATCTATTTGGCGACTCGAGAGATAACTCCTCCATTGACATTACTGCCAGTGACCTCCTCAACCGTTTATCTTTCCAGGCACAACAGGATATCTCTTCCCTTAAAGGCATTGCTGGAGAGACAGGAAAGAAGCTCAGTTCTTTAGCTTCCAGTTTGATGACAGATCTGCAGGACCGTATCCTTTAA 1224 0.4355 MDSETNDKNTVFRKLKAKPQNKMCFDCNAKNPTWASVTYGIFLCIDCSAFHRSLGVHISFVRQALSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKTEAKYTSRAAELYRQILSKEVAKSMAEEAGVPSSPFISQPAQGANELPEVKTNEAPKQNTVEKPEKPKSTSSPRASYTAVSSTVKKPIGAKKPGKSGGLGARKLSKKPSESLYEQKPEEAPSPVVTSSTNNNLSDGPSLTSRFEYVENVQSSEFNSGGSNAIGHVSAPKSTSFFSDFGMDSSFPKRSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDQDKADMEAKTTLSKFSGSAAISSADLFGDSRDNSSIDITASDLLNRLSFQAQQDISSLKGIAGETGKKLSSLASSLMTDLQDRIL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0067 407 MobiDBLite consensus disorder prediction 284 314 - -
Lal23g0067 407 CDD ArfGap_ArfGap2_3_like 7 125 - -
Lal23g0067 407 Gene3D Arf GTPase activating protein 1 136 IPR038508 -
Lal23g0067 407 SMART arf_gap_3 9 128 IPR001164 GO:0005096
Lal23g0067 407 MobiDBLite consensus disorder prediction 133 244 - -
Lal23g0067 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 5 407 - -
Lal23g0067 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 5 407 - -
Lal23g0067 407 MobiDBLite consensus disorder prediction 284 298 - -
Lal23g0067 407 MobiDBLite consensus disorder prediction 223 244 - -
Lal23g0067 407 Pfam Putative GTPase activating protein for Arf 10 115 IPR001164 GO:0005096
Lal23g0067 407 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Lal23g0067 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 130 IPR001164 GO:0005096
Lal23g0067 407 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Lal23g0067 407 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Lal23g0067 407 PRINTS HIV Rev interacting protein signature 64 85 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0067 Lal-Chr23 553890 562000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0067 1 85 C2H2 Transcription Factor Family AT3G07940 43.023 3.56e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0067 K12493 K11855 gmx:100785169 647.121