Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0059 ATGGCCATGACCACAAAGGATCATAGCCTACATGAGTTAGGGTTCTTGCAAGAAAACAATTCATGGGATTTCTTCAATTATGATAACTTGGGTGAGACAAAAGAGAAGTTACAAATCCAACTATTGAGTGAGGAAGAAGGAAATGAAGGAGAGAATAGTAGAAGAAATGGTAAGAATGTAATTATTGGTGATGAAAGGAAAAATGAAAAGTGTGATAATGGAAAAGTTATGTGGTCCGAGAAACAAAGGAGGAAGAAGATAGGGAGCTTGTTTGCAACTCTTCATGATTTGATTCCTCAAATTCCTTCTAAGGCAAACAAATCAAGCATTATAGATGAAACAATAAGTTACATTGAAAGTCTAAAGCAAACTTTGGAAAAGCTAGAGAAAGAAAAGAAAGAAAGACTTCAATCTCTATTCACTTATGAAGTTCATCCATCTATAATCAATTCATCACAATGGTACCCCAATGACTCTACAATTGCAAATGGAAACTCCAACACTTCAAGTTCAACCATACCTTCATCACCTACAAAGTTAGTAGCATTTGAAACATGGTCTTCTCCAAATTTGGTCTTGAACATTTGTGGAAATGAAGCACAATTTTGCATATTTGCAACTAGGAAGCCAAACATTTTGACCAACATTGCTTTAGTGTTAGAGAAGCATAAGATAGATGTTATATCTGCCAGCATTTTGAGCAATGGTCATGGAAACCAATACACAATTTTAGCCCATGCAAATGGAAGTTCATATCAATTGAGCCCAGAGACTACTTTAGTGGGAGAAATTTACAAGCAAGCTGCCGAAGAGATTATTCGATGGATCTCTTAA 834 0.3561 MAMTTKDHSLHELGFLQENNSWDFFNYDNLGETKEKLQIQLLSEEEGNEGENSRRNGKNVIIGDERKNEKCDNGKVMWSEKQRRKKIGSLFATLHDLIPQIPSKANKSSIIDETISYIESLKQTLEKLEKEKKERLQSLFTYEVHPSIINSSQWYPNDSTIANGNSNTSSSTIPSSPTKLVAFETWSSPNLVLNICGNEAQFCIFATRKPNILTNIALVLEKHKIDVISASILSNGHGNQYTILAHANGSSYQLSPETTLVGEIYKQAAEEIIRWIS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0059 277 Coils Coil 111 138 - -
Lal23g0059 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 121 IPR011598 GO:0046983
Lal23g0059 277 SMART finulus 77 127 IPR011598 GO:0046983
Lal23g0059 277 Gene3D - 77 142 IPR036638 GO:0046983
Lal23g0059 277 CDD bHLH_AtbHLH_like 77 123 IPR045239 -
Lal23g0059 277 Pfam Helix-loop-helix DNA-binding domain 80 121 IPR011598 GO:0046983
Lal23g0059 277 PANTHER TRANSCRIPTION FACTOR BHLH95 45 275 - -
Lal23g0059 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 145 IPR036638 GO:0046983
Lal23g0059 277 PANTHER - 45 275 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0059 Lal-Chr23 498573 500840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0059 11 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 31.629 1.12e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g0059 HLH 5.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0059 - - lang:109331893 417.927