Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0058 ATGGTTGGGTTGGGTTGGATAGGATTGAAAGCAAGTGGTGGTGAAGAAGAAGAAGTGATTGTTGAAATTGCGTTGATCATGGGGTGGGGTCACCTTGGCCGGATTCCAAGTAGTAGTGCAGATGCAGGTCCCACCGCCACCACCACCGAGCCACAACGGTTCCCTCTGGCGGCTCAGCCGGAAGTGATGCGTGCAGCCGAGAAGGACGATCAGTATGCTTCTTTTGTTTATGAAGCCTGCCGTGACGCCTTTCGCCACCTCTTCGGTACTAGAGTTGCAGTTACCTACCAAAATGAGTTCATGGTTGCGGTGACTGTAATTGCGGTTGCGGTTAGTATGATTGCGGTGACATTTACTATGATTGTGGTTACGTTTATTGCGATTGCAATCACGGTTGCGGTTACTGAGATTGCGACTAAGCTTCTAGGGCAGATTCTATACTATGTGCTTACAACCGGCTCGGGACAACAGACCTTAGGAGAGGAATATTGTGATATCACTCAGATTGCTGGATCTTATGGACTTCCTCCAACCCCTGCGAGGCGCACTCTTTACATTTTATACCAGACCGCTGTTCCATATATTGCAGAAAGAATAAGTTCTAGACTTGCTTCCCGTGGGATTATGCTTGCTGATTCTGAGGAGAGTTATAATGAAAATGCCTCCAGGAGCAGTAGTTCTCAGATTTCTACCTTGAGTGAACTTCCTTCTTCTTCCACATTAGGACAATATATTCCAAGTCTAATGAGGTTGAAGGAAAAACTGAGTGGACTTTGGTTGCATACGATTCAGAGGTGGCCTGCGATGCTCCCTATTGTTCGTGAGTTGCTGCAGTTGCTTCTTCGTGCTAACCTCATGCTGTTCTACTTTGAAGGCCTCTATTACCATATATCCAAACGTGCTTCAAGCATTCGTTATGTGTTCATCGGAAAAGCATCAAATCAAAGACCAAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGGGTTGCGTCGAAGAAATTTGACTTCAATTGCTGGTTCAGTAAATCAAGCATCCTTTGCAACATACCATAGATCGCCAGGCCATGATTTACCTGTTTTAAACGAAGAAGGTGCTCTAGCATCTCCCGATGCTGACAAAGGAACTTTGGTCTCTGAATCTTCATCTCCTGAGTACCATGCAACTGGCGGGGCTAGCAAATGCACGCTATGCCTGAGTAATCGTCAACATCCAACGGCCACTTCATGCGGCCATGTATTCTGCTGGACCTGTATCGCAGAATGGTGCAATGAAAAGCCAGAATGCCCTCTTTGCCGCACACCGATAACACACTCAAGTCTAGTTTGTGTGTATCATTCCGACTTCTAG 1374 0.4607 MVGLGWIGLKASGGEEEEVIVEIALIMGWGHLGRIPSSSADAGPTATTTEPQRFPLAAQPEVMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVTYQNEFMVAVTVIAVAVSMIAVTFTMIVVTFIAIAITVAVTEIATKLLGQILYYVLTTGSGQQTLGEEYCDITQIAGSYGLPPTPARRTLYILYQTAVPYIAERISSRLASRGIMLADSEESYNENASRSSSSQISTLSELPSSSTLGQYIPSLMRLKEKLSGLWLHTIQRWPAMLPIVRELLQLLLRANLMLFYFEGLYYHISKRASSIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEGLRRRNLTSIAGSVNQASFATYHRSPGHDLPVLNEEGALASPDADKGTLVSESSSPEYHATGGASKCTLCLSNRQHPTATSCGHVFCWTCIAEWCNEKPECPLCRTPITHSSLVCVYHSDF 457
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0058 457 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 50 454 - -
Lal23g0058 457 ProSitePatterns Zinc finger RING-type signature. 418 427 IPR017907 -
Lal23g0058 457 CDD RING-HC_PEX10 402 441 - -
Lal23g0058 457 SMART ring_2 403 440 IPR001841 -
Lal23g0058 457 Pfam Zinc finger, C3HC4 type (RING finger) 401 446 - -
Lal23g0058 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 454 IPR013083 -
Lal23g0058 457 ProSiteProfiles Zinc finger RING-type profile. 403 441 IPR001841 -
Lal23g0058 457 PANTHER PEROXISOME BIOGENESIS FACTOR 10 50 454 - -
Lal23g0058 457 Pfam Pex2 / Pex12 amino terminal region 139 339 IPR006845 -
Lal23g0058 457 SUPERFAMILY RING/U-box 402 446 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal23g0058 Lal-Chr23 487394 492336 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0058 379 453 C3H Transcription Factor Family AT4G28270 31.868 1.78e-11 61.2