Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0054 ATGCCTTCTTCATCTCTTTTGCTTCTCTTCCTTTGTTGGCTTGCAACTACTGCAGTTTGTGACCCAAGAGCCACAAAAGAAGCTTTAATATGCACAAACAGAACTGCACCTATGCTTCACCGTGATGATTTCATATCAAGTTTTTTGGCTTCAATGGATGCACTAACTCCTCTTATTTCATCACAAAGATATGGTGCAGTTTTGAATGGCACTGGAAACAACACTGTCTATGCTTTTAGTGAGTGCTTCAAAGATCTCTCTCAATCAGATTGTGATGTTTGTCTTGCACAAAGTAAGACTCAAATACTTAGTTGTCTTCCCTTTCAGAAAGGTACTCGTGGTGGAAGGCTCTTCTTTGATGGCTGCTATCTTAGGTATGATGACTATAACTTCTTCAATGAGAGTCTAAGTGATCAAGACACAACTGTGTGTAACACCAGTGATTTTAGTGGGAATAGGAATGTTTATGGAAACAATGCTTTGGAGTTAGTGAGAAATTTGAGTGTGTTAGCACCAAGAAATGATGGGTTCTTTGTTGGGTCTGTGAATAAAAAGAATGTAAGTGTTTATGGGTTGGCACAGTGTTGGAAAATTGTGAATGGCAGTGCCTGCAAGAATTGTTTGGCAGATGCTGTTACAAAGATTGGTTCATGTGTTCCAAGAGAAGAAGGAAGGGCACTGAATGCTGGTTGTTACTTGAGATATTCCAACCAAAAGTTCTATAACAATTCTTCCATTGATTCACCTGCAGGAGGAAATCATGGACGTCAAAAGCTAGCTAAAATCCTGGCTGCTTCTTCTACCGCCGTGGCGCTTCTGCTGGTTGTTGCAACAGTTGTTTTCTTTGTAAAGAAGAATGTATTGAAGAAGAGAAGAGAAAAAAGACAATTTGGTGTACTTTTGCATAGAGTGAGCAAGTCCAAGCTAAATATGGCATATGAAATTCTTGAAAAAGCATCAAACTACTTCAATGAGGCCAATAAGCTAGGACAAGGTGGATCAGGTTCTGTTTATAAAGGAGTTCTTCCGGATGGAAATATCGTAGCTATTAAAAGGCTTAGCTTTATCACAACACAATGGGCAGATCATTTCTTCAATGAGGTCAATTTGATCAATGGCATTCATCACAAAAATCTTGTAAAGCTTTTGGGTTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTACCTAATCAGAGCCTCCACGATCACCTTTCCGTCAGAAGGATTTCTCAACCATTGAGTTGGGAAGTAAGGCATAAGATCATCTTAGGAGTTGCAGAGGGCATGGCCTATCTTCATGAGGATTCACCTGTGAGAATCATTCATAGGGATATAAAATTAAGCAATGTTCTGCTTGATGAGGACTTCACAGCCAAGATTGCCGATTTCGGACTCGCTAGATTATTTCCAGAAGACAAGTCCCACATTAGCACAGCCGTTGCTGGCACATTGGGTTATATGGCTCCGGAATATATAGTTCGTGGTCAGTTGTCCGAGAAAGCAGATGTTTACAGCTTCGGAGTTCTAGTTGTCGAAATCGTATCTGGCAAAAGAAACAGTTCCTTTGTTTTAAATTCATCCTCTATCCTACAAGTGGTTTGGAGCCTCTATAGATCAAGTAGGCTATCTGACATCGTTGATCCGATCCTAGAGGGTAATTTTGGTCGAGACGAAGCATGTGGATTGCTTCAAATCGGGTTGCTTTGTGCACAAGCATCTGCAGAGCTGAGACCATCAATGTCAGTAGTTGTTAAAATGATTAATGGCAATCATGAAATTCCTGAGCCAACTCAACCACCATTTCTTAACTCTGGTAGTTCAGAATTCAGCAAATCTAGATATAATAATTTTCAACCTGGATCAAACACACCCTCTTCAGGGGACAACATGACTGAAAGTTTGATTGAGCCAAGATGA 1929 0.4023 MPSSSLLLLFLCWLATTAVCDPRATKEALICTNRTAPMLHRDDFISSFLASMDALTPLISSQRYGAVLNGTGNNTVYAFSECFKDLSQSDCDVCLAQSKTQILSCLPFQKGTRGGRLFFDGCYLRYDDYNFFNESLSDQDTTVCNTSDFSGNRNVYGNNALELVRNLSVLAPRNDGFFVGSVNKKNVSVYGLAQCWKIVNGSACKNCLADAVTKIGSCVPREEGRALNAGCYLRYSNQKFYNNSSIDSPAGGNHGRQKLAKILAASSTAVALLLVVATVVFFVKKNVLKKRREKRQFGVLLHRVSKSKLNMAYEILEKASNYFNEANKLGQGGSGSVYKGVLPDGNIVAIKRLSFITTQWADHFFNEVNLINGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHLSVRRISQPLSWEVRHKIILGVAEGMAYLHEDSPVRIIHRDIKLSNVLLDEDFTAKIADFGLARLFPEDKSHISTAVAGTLGYMAPEYIVRGQLSEKADVYSFGVLVVEIVSGKRNSSFVLNSSSILQVVWSLYRSSRLSDIVDPILEGNFGRDEACGLLQIGLLCAQASAELRPSMSVVVKMINGNHEIPEPTQPPFLNSGSSEFSKSRYNNFQPGSNTPSSGDNMTESLIEPR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0054 642 CDD STKc_IRAK 329 593 - -
Lal23g0054 642 Pfam Salt stress response/antifungal 144 238 IPR002902 -
Lal23g0054 642 Pfam Salt stress response/antifungal 45 129 IPR002902 -
Lal23g0054 642 ProSiteProfiles Gnk2-homologous domain profile. 25 131 IPR002902 -
Lal23g0054 642 ProSiteProfiles Protein kinase domain profile. 323 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0054 642 Gene3D Phosphorylase Kinase; domain 1 282 398 - -
Lal23g0054 642 MobiDBLite consensus disorder prediction 601 636 - -
Lal23g0054 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Lal23g0054 642 Gene3D - 138 240 IPR038408 -
Lal23g0054 642 Gene3D - 30 131 IPR038408 -
Lal23g0054 642 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Lal23g0054 642 MobiDBLite consensus disorder prediction 598 642 - -
Lal23g0054 642 ProSiteProfiles Gnk2-homologous domain profile. 137 240 IPR002902 -
Lal23g0054 642 SMART serkin_6 323 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0054 642 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 16 612 - -
Lal23g0054 642 SUPERFAMILY Protein kinase-like (PK-like) 311 613 IPR011009 -
Lal23g0054 642 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 612 - -
Lal23g0054 642 Pfam Protein kinase domain 324 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0054 642 Gene3D Transferase(Phosphotransferase) domain 1 399 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0054 Lal-Chr23 420192 425146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0054 1 488 Receptor kinase-like Gene Family AT1G70530 61.145 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal23g0054 Pkinase 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0054 - - gmx:100787359 932.939