Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0047 ATGAATGAAATGGAAATAGTTGAGTGGCTTAGACCCCTTGTTCATACCAAAGCTTGGGACTTTATAGTTGTTTGGAAATATGGCAATGACCCAACTAGGTATGTTGAGTGGATGGGTTGTTGTTGTAGTGGTAGTTGCAGTGAAGAAAATATTGAGCAGAATGTGATCAAGCTCAAAGAAGAAGAAATGGATGATCAATGCTACTTGGCTCCTAATCTTATTTGTAGGGATACACACTTTCATCATCCAATTAGAACTAAGGCTTGTGAGGAACTTGCCAAGCTTCCTTTTGCATTTTCTCTATTTTCTGGGGTTCATGGAGAGATTGCTATATCACAGCAACCAAAATGGCTTACCAAGAACCAGGAGGGTTCAGTAGGGACACAAGTTCTGATCCCTATTGTTGGTGGACTTATCGAGCTCTTCACTGCAAAGCTTATTCCAAAAGATATGAGTATCATAGAGTACATATCAGCACACTGTTGTGTCTCTTTGAAGCAAGAAACTACAACTGCTGCAGGGTACGCGAGTCTAAACTTCATTGATCACCTGCCAGGAGCAAAGTGCAGCTCCCATCCTAGCATCGAAAGAACCTCGAGTGGGTCTAATCCTTCAAATGAACATTTATCATTTGATTCAAAGACTCAGCATGAATATCTGAAGCAATTAGTTAAAATATCTCCTATGCCTAAAGTTAAAAGGCCTGAGTACAATGAAGCTTCAGGGAAACAAAGGAAAGGTTTAAGTTCCCATTGTGGCACTAGGGAAGAAGATAAAGCAAAACTGGCGAGGCAGCCTCGAAGCGAAACCTTCATTGCTAAAAATCTTGCCACAGAGAGGAAAAGGAGAAACAAGATAAAAAATGGACTTTTCACGCTACGGTCTCTGGTCCCAAAAATAACCAAGATGGATAGAGTATCAATTCTTTCAGATGCAATTGACTACATAAAGGAATTGCAGCATGAGGTAAAAGAACTTAAAGATGAGGTTATGGCTTTGGAAGTGGAGGAGTGTGAAAGAAACAAGCCACAATTGAAGATGTCAAATGACAAAGAAAATGGAGGAATGAGACGTGCCCCTTTTACTGAACTCAACCAAAGCTCTTCTGAATGCAACAAAATGAGGCAGATGAAGGTGCAAGTAGAAGTGTACCACATCGGCCGGACAGATTTCTTGATTAAGTTATACTGTGAGAAGAAGCAAGGTGGGTTTTCAAGGTTGATGGAAGCTATACATTCATTTGGACTGCAGGTGGCCAGTGCCAATGTGGCCACACTTGATGGCAAAGTCATTAACATTCTAACAGTTAAGGCAACAAAGCAGGATATTCACCCAGCTACACTGAAAGAGTATTTGATAAAGAATGCAGGTGAATGA 1377 0.4074 MNEMEIVEWLRPLVHTKAWDFIVVWKYGNDPTRYVEWMGCCCSGSCSEENIEQNVIKLKEEEMDDQCYLAPNLICRDTHFHHPIRTKACEELAKLPFAFSLFSGVHGEIAISQQPKWLTKNQEGSVGTQVLIPIVGGLIELFTAKLIPKDMSIIEYISAHCCVSLKQETTTAAGYASLNFIDHLPGAKCSSHPSIERTSSGSNPSNEHLSFDSKTQHEYLKQLVKISPMPKVKRPEYNEASGKQRKGLSSHCGTREEDKAKLARQPRSETFIAKNLATERKRRNKIKNGLFTLRSLVPKITKMDRVSILSDAIDYIKELQHEVKELKDEVMALEVEECERNKPQLKMSNDKENGGMRRAPFTELNQSSSECNKMRQMKVQVEVYHIGRTDFLIKLYCEKKQGGFSRLMEAIHSFGLQVASANVATLDGKVINILTVKATKQDIHPATLKEYLIKNAGE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0047 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Lal23g0047 458 MobiDBLite consensus disorder prediction 249 265 - -
Lal23g0047 458 MobiDBLite consensus disorder prediction 192 210 - -
Lal23g0047 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 335 IPR036638 GO:0046983
Lal23g0047 458 Coils Coil 309 336 - -
Lal23g0047 458 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 158 IPR025610 -
Lal23g0047 458 MobiDBLite consensus disorder prediction 191 210 - -
Lal23g0047 458 Gene3D - 271 350 IPR036638 GO:0046983
Lal23g0047 458 MobiDBLite consensus disorder prediction 233 265 - -
Lal23g0047 458 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 69 454 - -
Lal23g0047 458 SMART finulus 276 325 IPR011598 GO:0046983
Lal23g0047 458 Pfam Helix-loop-helix DNA-binding domain 277 320 IPR011598 GO:0046983
Lal23g0047 458 PANTHER TRANSCRIPTION FACTOR BHLH90 69 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0047 Lal-Chr23 350213 353811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0047 2 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 32.677 7.96e-71 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g0047 bHLH-MYC_N 1.6e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0047 - - gmx:100807261 548.125