Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0024 ATGAAAGTGGATGAAGTTTATAGCAGCAATGAATGGAGCATAGAGGAAGATAAAGCATTTGAAAATGGTTTGGCAATTCATCCAGAGGATGCTTCAGATAGATGGGAAAAGATTGCAAGAGATGTACCAGGAAAAACTTTACAAGAGATTCAACTTCACTACAATCTCTTGGTTGAAGATGTTAACCAGATTGAATCTGGTTGTGTTCCTCTACCATCTTATAATTCTTCTTCTCCTATGGCTTCAATAGGCCAAGTGAGTGATGAAGGAGCTGAAAACAAGGGAACCAGATTCTGGAATTATAACAATGAATCTAATCTTAAGGCTTCAAAATCAGATCAAGAACGGCGAAAGGGTATTGCCTGGACTGAGGAAGAACACAGGTTATTTCTTCTTGGTTTGGAGAAGTATGGAAAAGGCGATTGGCGTAGTATATCAAGGAACTTTGTGGTAACAAGAACACCTACACAAGTAGCAAGCCATGCCCAAAAATACTTCATTCGTCTAAACTCGATGAATAAAGATAGAAGACGATCAAGCATACACGATATCACCAGTGTGAACAATGGAGATGCTTCAGCAGCTCAAGGACCAATTACAGGTCAAGCAAATGGCTCAGCTGGAAACTGTACTGGAAAATTAGCCAAACAAGGCCCTTCAACCCAAAGTGGTGCCCCGGGTGTAGGACTATATGCTCCTCCAACTATAGGACAACCTATAGGAGGAGGAGCCCTTGTGCCTGCATTTGGCACCCCGGTGAATCTTCCTCCCCCTCACATGGCTTATGGTGCTGTGATTCCTGGTGCACCAATGAACTTGGGTCATATGCCATACCACATGCCACAGCCACACACATCTCATAGATGA 867 0.4291 MKVDEVYSSNEWSIEEDKAFENGLAIHPEDASDRWEKIARDVPGKTLQEIQLHYNLLVEDVNQIESGCVPLPSYNSSSPMASIGQVSDEGAENKGTRFWNYNNESNLKASKSDQERRKGIAWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDASAAQGPITGQANGSAGNCTGKLAKQGPSTQSGAPGVGLYAPPTIGQPIGGGALVPAFGTPVNLPPPHMAYGAVIPGAPMNLGHMPYHMPQPHTSHR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0024 288 CDD SANT 11 58 IPR001005 -
Lal23g0024 288 MobiDBLite consensus disorder prediction 187 224 - -
Lal23g0024 288 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 168 IPR006447 GO:0003677
Lal23g0024 288 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Lal23g0024 288 Gene3D - 6 71 - -
Lal23g0024 288 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Lal23g0024 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 170 IPR017930 -
Lal23g0024 288 Gene3D - 120 172 - -
Lal23g0024 288 ProSiteProfiles SANT domain profile. 122 170 IPR017884 -
Lal23g0024 288 MobiDBLite consensus disorder prediction 187 230 - -
Lal23g0024 288 ProSiteProfiles Myb-like domain profile. 114 166 IPR001005 -
Lal23g0024 288 SUPERFAMILY Homeodomain-like 116 171 IPR009057 -
Lal23g0024 288 CDD SANT 121 166 IPR001005 -
Lal23g0024 288 Pfam Myb-like DNA-binding domain 121 166 IPR001005 -
Lal23g0024 288 Pfam Myb-like DNA-binding domain 10 55 IPR001005 -
Lal23g0024 288 PANTHER TRANSCRIPTION FACTOR KUA1 8 288 - -
Lal23g0024 288 SMART sant 8 60 IPR001005 -
Lal23g0024 288 SMART sant 118 168 IPR001005 -
Lal23g0024 288 PANTHER BNAA03G55780D PROTEIN 8 288 - -
Lal23g0024 288 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0024 Lal-Chr23 217091 221131 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal23g0024 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0024 - - gmx:100820272 438.728