Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0016 ATGGGTAAGGTATTGGAGTCTTTGGATGTGTCTAAATCAAAGGAGAACAAGAAGAAGAAAAAGAAAAATGAGGTTTTGGAAGAAGAAGAAGAAGAAAAGAGTGGAAGGTGTTGGCTTAGGTTCAGGTTCTTTGGTAGCTGCATTTCTTCTAGATCCAAGGTTGATAGCTCAGTTAGTGGTACCAGCACTAATTATGCTGAAAGTAAATCAACTATAGATACAAGTAGAGACCAACCAACAGTTCCTGTAGTCTCTTCTACAACCACCAGTAATACCGAAAGCAATGCATCCACTTCGAAACTTGAAGAGGAACTTAAAGTTGCTTCAAGGCTTCGAAAATTCTCTTTCAATGATCTTAAGCTAGCAACAAGAAATTTTCGGCCCGAGAGTCTTCTTGGTGAAGGCGGGTTTGGTTGCGTGTTCAAGGGTTGGATTGAAGAAAATGGAACTGGACCTGTGAAACCTGGCACAGGGCTTACTGTTGCTGTGAAAACCCTCAATCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTTGGTGATCTAGTTCATCCAAACCTTGTTAAACTTATAGGTTACTGCATTGAGGATGATCAAAGGTTGCTAGTGTATGACTTCATGCCTCGTGGAAGTCTGGAAAATCACTTGTTTAGGAGATCCCTGCCTCTTCCATGGTCCATTAGGATGAAAATCGCACTAAGTGCTGCACAGGGTCTTGCTTTTCTTCACGAGGAAGCTGAACGACCTGTAATATATAGGGATTTCAAAACTTCCAATATACTGTTGGATGCAGACTACAATGCCAAGCTCTCGGACTTTGGACTCGCAAAAGATGGTCCAGAAGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACCTATGGTTATGCAGCACCAGAATATGTCATGACGGGACATCTTACATCAAGGAGTGATGTATATAGTTTTGGAGTTGTACTGCTTGAGATGTTGACTGGTAGAAGATCAATGGACAAAAACCGTCCCAACGGTGAACATAACCTTGTGGAATGGGCTAGACCACATCTAGGAGAGAGAAGAAGATTCTACCGGTTGATCGACCCTCGCTTGGAAGGTCATTTTTCGATTAAAGGAGCTCAGAAAGCTGCTCATCTCGCTGCTCACTGCCTTAGTAGAGATCCGAAAGCCAGACCATTGATGAGTGAAGTTGTAGAAGCTTTGAAGCCTCTACCAAACCTTAAGGACATGGCTAGTTCATCATATTATTTCCAGACAATGCAAGCCGACCGATGTGGCGCAAGCCCGAATACTAGAAACGGGCAAACACAAGGTGGCACATTGCTCACCCGGAATGGCCAGCAGCAGAGGAGCCTTTCATTATCAAATGGTACTCATGCATCTCCATATCATCACCAGTATCCTCAACAATCACCAAAACCCAATGCCAAGGGATAG 1452 0.4353 MGKVLESLDVSKSKENKKKKKKNEVLEEEEEEKSGRCWLRFRFFGSCISSRSKVDSSVSGTSTNYAESKSTIDTSRDQPTVPVVSSTTTSNTESNASTSKLEEELKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTGPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYDFMPRGSLENHLFRRSLPLPWSIRMKIALSAAQGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRCGASPNTRNGQTQGGTLLTRNGQQQRSLSLSNGTHASPYHHQYPQQSPKPNAKG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0016 483 MobiDBLite consensus disorder prediction 52 98 - -
Lal23g0016 483 Coils Coil 11 36 - -
Lal23g0016 483 ProSiteProfiles Protein kinase domain profile. 126 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g0016 483 MobiDBLite consensus disorder prediction 8 34 - -
Lal23g0016 483 Gene3D Phosphorylase Kinase; domain 1 85 211 - -
Lal23g0016 483 Gene3D Transferase(Phosphotransferase) domain 1 212 427 - -
Lal23g0016 483 SUPERFAMILY Protein kinase-like (PK-like) 106 406 IPR011009 -
Lal23g0016 483 Pfam Protein tyrosine and serine/threonine kinase 130 406 IPR001245 GO:0004672|GO:0006468
Lal23g0016 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Lal23g0016 483 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 58 473 - -
Lal23g0016 483 MobiDBLite consensus disorder prediction 52 100 - -
Lal23g0016 483 ProSitePatterns Protein kinases ATP-binding region signature. 132 164 IPR017441 GO:0005524
Lal23g0016 483 CDD STKc_IRAK 132 409 - -
Lal23g0016 483 MobiDBLite consensus disorder prediction 431 483 - -
Lal23g0016 483 PANTHER OS01G0588500 PROTEIN-RELATED 58 473 - -
Lal23g0016 483 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0016 Lal-Chr23 125901 131191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0016 73 406 Glycoside Hydrolase AT3G07070 53.254 2.54e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal23g0016 PK_Tyr_Ser-Thr 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0016 - - gmx:100787127 825.854