Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0014 ATGGTAAGCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACTTATTGAGCAATATAATACCGAAGCAAAGATTGTAAATACTGGTATTGTACTTCAAGTAGGCGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTGGAATTTGAAGAGGGTACTATAGGCATTGCTTTGAATTTGGAATTAAGTAATATTGGTGTTGTGTTAATGGGTGATGGAAGAATTCCTCAGATACCAGTAAGTGAGGCTTATTTGGGTCGTGTTATAAATGCTCTGGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTTGGAATCTTGGTTAATTGAATGTCCTGCTCCTGGTATTATTTCGAGACGTTCGGTATATGAGCCTCTTCAAACAGGACTTATTGCTATTGATTCAATGATCCCTATAGGGCGCGGTCAACGAGAATTAATTATTGGGGACAGACAAACGGGTAAAATTGCAGTAGCCACAGATACCATTCTCAATCAACAAGGACAAAATGTAATATGTGTTTATGTCGCTATCGGTCAAAAAGCATCTTCTGTGACTCAAGTGGTGACTGCTTTACAAGAAAGGGGAGCAATGGAATATACTATTGTAGTAGTTGAAACTGCGGATTCGCCAGCTACATTACAATACCTCGCTCCTTATACAGGAGCAGCTTTGGCTGAATATTTTCTGTACCGCGAACGCCACACTTTAATCATTTATCACGATCCCTCCAAACAAGCACAAGCTTATCGCCAAATGTCTCTTCTATTACGAAAACTGCCGGGTCGCGAAGCTTATCCGGGAGATGTTTTTTATTTGCACTCACGTCTTTTGGAAAGAGCCGCTAAATCAAGTTCTCAATTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCGGGAGATGTTTCCGCTTATATTCCTACTAATGTAATTTCCATTACAAATGGCCAAATATTCTTATCTGCAGATCTATTCAATGCTGGAATCAGACCTGCAATTAATGTGGGCATTTATGTTTCCAGAGTTGGATCGGCAGCTCAAATTAATGCCATGAAACAAGTAGCTGGTAAATTAAAATTAGAATTGGCACAATTTGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACTCAAAATCAATTGGTGAGAGGTCAACAATTGCGCGAATTACTTAAACAATCCCAATCGGCTCCTCTCATTGTGGAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAATGAAATTTCTAGTTGAGTTACATGCTTACTTAAAAACGAATAAACCTCAAGTCCAACAAATCATATCTTCTACCAAGACATTCACTGGAGAAGCAGAAGCCCTTTTGAAGGAGGCTCTTCAGGAACAGATCGAACTATTTTTACTTCACGAACAAGTTGAAAAAAATTGA 1494 0.3855 MVSIRADEISKIIRELIEQYNTEAKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALNLELSNIGVVLMGDGRIPQIPVSEAYLGRVINALAKPIDGRGEISALESWLIECPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKIAVATDTILNQQGQNVICVYVAIGQKASSVTQVVTALQERGAMEYTIVVVETADSPATLQYLAPYTGAALAEYFLYRERHTLIIYHDPSKQAQAYRQMSLLLRKLPGREAYPGDVFYLHSRLLERAAKSSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITNGQIFLSADLFNAGIRPAINVGIYVSRVGSAAQINAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLVRGQQLRELLKQSQSAPLIVEEQIITIYTGTNGYLDSLEIGQVMKFLVELHAYLKTNKPQVQQIISSTKTFTGEAEALLKEALQEQIELFLLHEQVEKN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0014 497 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 1 493 - -
Lal23g0014 497 CDD ATP-synt_F1_alpha_N 28 81 - -
Lal23g0014 497 Gene3D - 2 83 IPR023366 -
Lal23g0014 497 PANTHER ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC 1 493 - -
Lal23g0014 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 358 IPR027417 -
Lal23g0014 497 CDD F1_ATPase_alpha 82 355 IPR033732 GO:0032559
Lal23g0014 497 Gene3D - 360 488 IPR038376 -
Lal23g0014 497 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 81 IPR036121 GO:0046034|GO:1902600
Lal23g0014 497 Hamap ATP synthase subunit alpha [atpA]. 2 489 IPR005294 GO:0015986|GO:0045261|GO:0046933
Lal23g0014 497 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 360 488 - -
Lal23g0014 497 Gene3D - 84 359 IPR027417 -
Lal23g0014 497 Pfam ATP synthase alpha/beta chain, C terminal domain 359 483 IPR000793 GO:0015986
Lal23g0014 497 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 79 IPR004100 GO:0046034|GO:1902600
Lal23g0014 497 TIGRFAM atpA: ATP synthase F1, alpha subunit 4 486 IPR005294 GO:0015986|GO:0045261|GO:0046933
Lal23g0014 497 Coils Coil 496 497 - -
Lal23g0014 497 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 137 351 IPR000194 GO:0005524
Lal23g0014 497 CDD ATP-synt_F1_alpha_C 363 488 IPR000793 GO:0015986
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0014 Lal-Chr23 114009 115541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0014 25 358 Primary Pumps ATPases(2) AT4G38510 30.141 6.22e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0014 K02111 - gmx:121173224 832.787