Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0006 ATGGTCCAATTCAATATTTGGTTGCTTTTTCTTTGTTTGTCAATAGTCACATTGGCAACCACACTGCATGCCAATTTGTTAGAGAGTGAAGAGTATTGGGAGAAACATGTTGTGGAGTTTGATGAATATTGGAAGGGAAGAGCAAGAATTGCTGAACAAGACAACAAAGCAGCTTATTCATCTGATCCCTATGCTGTCTCTGGCAACCTAACATCTAGTGTTAGCGAGCTCCTAGTTGGAAAGGGTGAACGAAGGAACTTGATGGGGAGAAACAAGGGACCATGCATGGCTACTAACCCAATTGATAGGTGCTGGAGATGTGACCCAAATTGGGCCAACAATCGCCAAAAGCTAGCTGATTGTGTTCAAGGGTTTGGAAGAAACACCAGAGGTGGCAAAGGTGGTCCTTTCTATATTGTAACTGATCCTTCAGATAATGACATGGTTACTCCAAAACCTGGCACTTTACGCCATGCAGTTACAAGAAATGGACCCTTGTGGATCATTTTTGCTCATAACATGATGATATACCTCAAACAAGAGCTTATAATGTCTAGTAACAAGACCATAGATGGAAGAGGTGCTGATGTTCACATTGCTAATGGTGCTGGCATTACTATACAATATATTAAGAATGTGATCATACATGGGGTTAAGATTTATAACATTCAGGTTCATGGTGGTGGATTAATTAGAGATTCTGAGGATCATTATGGTTTTAGGACACAAAGTGATGGTGATGGGATTTCAATATTTGGAGCAAGTAACGTTTGGATAGATCATGTTTCAATGAAAAATTGTTATGATGGACTCATTGATGCCATCATGGGATCCACTGCTATTACCATCTCCAACAGCCATTTCACTGATCACAATGAGGTGATGCTATTTGGAGCCAGTGATGGGTACAGTGGTGATAAGATAATGCAAATCACTGTAGCATTCAATCACTTTGGGAAGAGATTAGTACAAAGGATGCCAAGATGCAGATTTGGTTTTATACATGTGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCCAAAATCCAACCATTATTAGTGAGGGTAACCGATTTATAGGCCCTAACAATATTAATGCTAAACAGATAACAAAGAGGGAATACGTAACAGAGAGTGTATGGAAAAACTGGCAATGGAGATCAATAAATGATGAAGTGATGAATGGAGCATATTTCGTACAGTCTGGTCCTGAGTTGAAAAATAGGCCATTCTCAAGAATGGATATGATCAAAGCTAAGCCTGGTACTTATGTTGGAAGGCTTACACGTTATGCTGGCAAACTTGCATGCAGGATTGGTACTCCTTGTTAA 1347 0.3979 MVQFNIWLLFLCLSIVTLATTLHANLLESEEYWEKHVVEFDEYWKGRARIAEQDNKAAYSSDPYAVSGNLTSSVSELLVGKGERRNLMGRNKGPCMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTRGGKGGPFYIVTDPSDNDMVTPKPGTLRHAVTRNGPLWIIFAHNMMIYLKQELIMSSNKTIDGRGADVHIANGAGITIQYIKNVIIHGVKIYNIQVHGGGLIRDSEDHYGFRTQSDGDGISIFGASNVWIDHVSMKNCYDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDGYSGDKIMQITVAFNHFGKRLVQRMPRCRFGFIHVVNNDYTHWEMYAIGGSQNPTIISEGNRFIGPNNINAKQITKREYVTESVWKNWQWRSINDEVMNGAYFVQSGPELKNRPFSRMDMIKAKPGTYVGRLTRYAGKLACRIGTPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0006 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Lal23g0006 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Lal23g0006 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Lal23g0006 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Lal23g0006 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lal23g0006 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Lal23g0006 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Lal23g0006 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Lal23g0006 448 PANTHER PECTATE LYASE 5 448 - -
Lal23g0006 448 Gene3D - 98 441 IPR012334 -
Lal23g0006 448 Pfam Pectate lyase 180 364 IPR002022 -
Lal23g0006 448 SMART amb_all 173 370 IPR002022 -
Lal23g0006 448 SUPERFAMILY Pectin lyase-like 99 438 IPR011050 -
Lal23g0006 448 Pfam Pectate lyase, N terminus 36 87 IPR007524 GO:0030570
Lal23g0006 448 PANTHER PECTATE LYASE 18-RELATED 5 448 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0006 Lal-Chr23 90869 92552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0006 36 448 Polysaccharide Lyase AT1G14420 59.861 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0006 K01728 - gmx:100798579 712.605