Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g0005 ATGGCTGATCCTCATAAAACACCTTCTCTCGCCCCTGACAAGGATATCGACCAGGCAATTGCATCTCTTAAGAAAGGCTCACATCTCTTAAAGTATGGGCGAAGAGGGAAGCCAAAGTTCTGCCCATTTAGGCTTTCCAATGATGAATCTCTAATCATATGGTACTCTGGCAAGGAGGAGAAACAGATTAAGCTCAGTACTGTTTCAAAGATCATCCCTGGGCAGCGAACTGCAACATTTCAGAGGTATCCTCGGCCTGAGAAGGAATATCAATCATTTTCTCTTATATACAATAGTGATAGGTCCTTGGATTTGATATGTAAAGATAAAGATGAAGCTGAAATCTGGTTTGTTGCTCTCAAGGCATTAGTTACTCGAAGTAACAATCGTAAGTGGAGATTCGAAACAAGATGTGAAAGTGTTCACTCTGATAGTTCACATTCTGGCACAGGAAGATCCACTCCATCAGTTTCACCATTTGATCCAGGAGACAGTGACAGGGTGGTGTTTGACAATTCTTCGCAAAACAAATGGGTAAAGGCTTTCTCTGAAATAATTTCATATTCCGCAGCTAGCAAGAGTCCCTGTCAAACTGAATTAATTGCAAATTCCTCTTTCTCCTCTACATCTGTGGATATCTCAAACAATCGAAATTCTGCGTCTGAGGCAATTCGTATTAGCCTATCCAGTGCTGTAAGTTCATCCAGCCAGGGTTCTTATCATGAAGGTTTTGATGGCCTAGGTGATATTTTTATCTGGGGAGAAGGTGTTGGTGATGGAATTCTTGGTGGTGGAGCCTCATCTAGTTTTGAGATAGACGCATTCCTCCCCAAGGCCTTGGAATCAAAAGTAGTTCTAGATGTTCACAGTATTGGTTGTGGCTACAAACATGCTGTTATAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAAAGGAGTCAGGAGGTCGGCTTGGTCATGGTGTAGAAGTCGATGTTTCTCACCCTAAGCTCATTGACACACTTAGTGGCATGAATATTGAATTAGTATCGTGTGGAGAAAGTCATAGTTGTGCTGTTACATATTCTGGGGATCTTTTTACTTGGGGTGATGGTACTCACAATTCTGGCTTGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAATATGGAGGGTGTACGCATATCATATGTGTCGTGTGGACCTTGGCACACAGCTGTTGTTACCTCAGCTGGGCAGTTGTTTACATTTGGAGATGGAACTTTTGGTGCCTTGGGTCATGGAGATACTAGTAGCATAAATATTCCTCGGGAAGTAGAGACTTTGAAGGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCCGCGGTTGTTGAGATGATAAATGAATCCGTGGAATCTTCTACACACTCTCCTAGTGGAAAACTGTTCACTTGGGGTGATGGAGATAAAAGCCAACTTGGACATGTTGATAAGGAACCTAGACTAGTTCCTGAGTGTGTAATTGCATTGGATAATGAAAACATTTGTCGAGTGGCTTGTGGTGACACTCTTACAGTTGCTTTGACAACCTCAGGATATGTGTATACAATGGGCAGTGCAGCTTACGGACAACTTGGCTGTCCTGCGGCTGATGGGAAAATCCCTACACGTGTGGAAGATATTATCGGTGACAGTTTTGTAGAAGATATTGCTTGTGGTTCTTATCATGTTGCAGTCCTGACCTCCAGGACAGAGATTTACACATGGGGGAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACCGGAGTAAACCCACACTAGTTGAGTTTTTAAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGGTCAAACTTCACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGTTGACCATTCTGTGTGTTCTGGATGTCGTAATCCTTTTGGATTCAGAAGAAAACGGCATAATTGTTACAACTGTGGTCTTGTCTTTTGCAAAGCATGCACTAGCAGGAAATCAATGAAAGCTGCCCTTGCTCCTAATTCCAACAAGCCGTATCGGGTTTGTGATGACTGCTACTCTAAACTTAAGAAATCTGCAGACTCAGTTTCCTCACGCCAAAGTGTTAGTCTGAGAAGTGTGAGTTTGCAAGATGGTAAGGTCAGTAAATTACAAGGATCCCTATTAAGGCTTTCATCTTTCGGTTCTATTGCTCAAGCAGAGAGCAGCCACTCAAAGCTTCCTGAATCACATGATAGCCATCTCTTTCCATCTTTGAATGGAAAACTACAAGTGGGGGGTTTTGCTCCTTCAAAAGCATCAAATTCTCTTTCTGAAGAATCCAAGAAACTCCTTTCAGTTTCCGAGCCTGCTCCAATAATATCTTGCCAATTATCATCTCCAGGTTCCTCAAGGTCAAGCCCACGCAAATCTTGTGAAGATATCAATGATGATTCAAAGCAAAGAAATGAAATTCTAAGTCAAGAAGTTATAACTTTAAGGGCACAGGTTGAAGATCTTAGTTGTAAGTCAAAAAGTCTTGAAGCTGAGCTTGAGAGAACATCAAAGCAATTGAAGGAAGTGAGTGCAGTAGCTGCAGACGAAGCTGCAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACTTCCCAGTTGAAGGAAATGGTGCAAAGACGACCAGGACATAATGATGCTGACCCAAGCACAGATTTCAATGCTGAAACCACAAAAATTAATGTAAATGACGAGAGCCATATAACAAACAATATGACTCCCATAAATGAGTGCAGCAGCAATGCATCATCAAATAGGACATTGCCTAATGGTACCAAAACACAAAGTGGAAAAGCAGAGTGGGTGGTTCAAGATGAGGCAGGTGTATACATAAGTTTGTCCTCCCTGCCAAGTGGTGGTAATGAACTTAAGCGTGTTCGCTTCAGTCGGAAGCATTTCACAGAAGAAGAAGCTGAAAACTGGTGGGCTGAAAATGGAGTCAGGGTATTGGAAAGACACAATGTAGTTGCTTCATAG 3039 0.4222 MADPHKTPSLAPDKDIDQAIASLKKGSHLLKYGRRGKPKFCPFRLSNDESLIIWYSGKEEKQIKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNSDRSLDLICKDKDEAEIWFVALKALVTRSNNRKWRFETRCESVHSDSSHSGTGRSTPSVSPFDPGDSDRVVFDNSSQNKWVKAFSEIISYSAASKSPCQTELIANSSFSSTSVDISNNRNSASEAIRISLSSAVSSSSQGSYHEGFDGLGDIFIWGEGVGDGILGGGASSSFEIDAFLPKALESKVVLDVHSIGCGYKHAVIVTKQGEIFSWGKESGGRLGHGVEVDVSHPKLIDTLSGMNIELVSCGESHSCAVTYSGDLFTWGDGTHNSGLLGHGNEVSHWIPKKVSGNMEGVRISYVSCGPWHTAVVTSAGQLFTFGDGTFGALGHGDTSSINIPREVETLKGLRTTRVSCGVWHTAAVVEMINESVESSTHSPSGKLFTWGDGDKSQLGHVDKEPRLVPECVIALDNENICRVACGDTLTVALTTSGYVYTMGSAAYGQLGCPAADGKIPTRVEDIIGDSFVEDIACGSYHVAVLTSRTEIYTWGKGLNGQLGHGDNDHRSKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSVCSGCRNPFGFRRKRHNCYNCGLVFCKACTSRKSMKAALAPNSNKPYRVCDDCYSKLKKSADSVSSRQSVSLRSVSLQDGKVSKLQGSLLRLSSFGSIAQAESSHSKLPESHDSHLFPSLNGKLQVGGFAPSKASNSLSEESKKLLSVSEPAPIISCQLSSPGSSRSSPRKSCEDINDDSKQRNEILSQEVITLRAQVEDLSCKSKSLEAELERTSKQLKEVSAVAADEAAKCKSAKEVIKSLTSQLKEMVQRRPGHNDADPSTDFNAETTKINVNDESHITNNMTPINECSSNASSNRTLPNGTKTQSGKAEWVVQDEAGVYISLSSLPSGGNELKRVRFSRKHFTEEEAENWWAENGVRVLERHNVVAS 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g0005 1012 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 637 699 IPR017455 -
Lal23g0005 1012 CDD PH_PLC_plant-like 15 125 - -
Lal23g0005 1012 SUPERFAMILY FYVE/PHD zinc finger 633 706 IPR011011 -
Lal23g0005 1012 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 450 460 IPR000408 -
Lal23g0005 1012 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 1006 - -
Lal23g0005 1012 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 305 356 IPR000408 -
Lal23g0005 1012 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Lal23g0005 1012 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 357 411 IPR000408 -
Lal23g0005 1012 Coils Coil 825 866 - -
Lal23g0005 1012 SUPERFAMILY PH domain-like 16 124 - -
Lal23g0005 1012 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 412 463 IPR000408 -
Lal23g0005 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 710 IPR013083 -
Lal23g0005 1012 Coils Coil 874 894 - -
Lal23g0005 1012 MobiDBLite consensus disorder prediction 797 811 - -
Lal23g0005 1012 Gene3D - 15 132 IPR011993 -
Lal23g0005 1012 Gene3D - 368 467 IPR009091 -
Lal23g0005 1012 Gene3D - 199 367 IPR009091 -
Lal23g0005 1012 Pfam FYVE zinc finger 633 699 IPR000306 GO:0046872
Lal23g0005 1012 Pfam Transcription factor BRX N-terminal domain 869 897 IPR027988 -
Lal23g0005 1012 MobiDBLite consensus disorder prediction 141 166 - -
Lal23g0005 1012 Gene3D - 470 639 IPR009091 -
Lal23g0005 1012 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 529 580 IPR000408 -
Lal23g0005 1012 MobiDBLite consensus disorder prediction 922 952 - -
Lal23g0005 1012 Pfam Transcription factor regulating root and shoot growth via Pin3 952 1007 IPR013591 -
Lal23g0005 1012 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 581 632 IPR000408 -
Lal23g0005 1012 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 304 IPR000408 -
Lal23g0005 1012 SUPERFAMILY RCC1/BLIP-II 247 634 IPR009091 -
Lal23g0005 1012 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 17 1006 - -
Lal23g0005 1012 MobiDBLite consensus disorder prediction 143 160 - -
Lal23g0005 1012 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 477 528 IPR000408 -
Lal23g0005 1012 ProSiteProfiles BRX domain profile. 953 1008 IPR013591 -
Lal23g0005 1012 SMART fyve_4 629 700 IPR000306 GO:0046872
Lal23g0005 1012 Pfam Regulator of chromosome condensation (RCC1) repeat 476 525 IPR000408 -
Lal23g0005 1012 Pfam Regulator of chromosome condensation (RCC1) repeat 356 408 IPR000408 -
Lal23g0005 1012 Pfam Regulator of chromosome condensation (RCC1) repeat 528 577 IPR000408 -
Lal23g0005 1012 Pfam Regulator of chromosome condensation (RCC1) repeat 583 629 IPR000408 -
Lal23g0005 1012 Pfam Regulator of chromosome condensation (RCC1) repeat 305 353 IPR000408 -
Lal23g0005 1012 Pfam Regulator of chromosome condensation (RCC1) repeat 412 460 IPR000408 -
Lal23g0005 1012 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 398 408 IPR000408 -
Lal23g0005 1012 MobiDBLite consensus disorder prediction 797 825 - -
Lal23g0005 1012 PRINTS Chromosome condensation regulator RCC1 signature 307 323 IPR000408 -
Lal23g0005 1012 PRINTS Chromosome condensation regulator RCC1 signature 357 373 IPR000408 -
Lal23g0005 1012 PRINTS Chromosome condensation regulator RCC1 signature 398 414 IPR000408 -
Lal23g0005 1012 PRINTS Chromosome condensation regulator RCC1 signature 414 428 IPR000408 -
Lal23g0005 1012 PRINTS Chromosome condensation regulator RCC1 signature 518 536 IPR000408 -
Lal23g0005 1012 PRINTS Chromosome condensation regulator RCC1 signature 576 597 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g0005 Lal-Chr23 75184 82969 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g0005 951 1009 Major Intrinsic Protein MIP AT1G31880 50.847 1.46e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g0005 - - lang:109355968 1348.18