Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1380 ATGGAAACAAAATCAAGAAAATTAAACTCAATATTCTATGCAAATTCTTATCATCCCATTCAAGTTGGAAGCATTGATGGAACTGATATTGTTCCTCATGACAAAGCTATTCATCGTGCTCATCTCTGTCAAAAACTTTCACTATATGACCCACATGGTGATTCTAAAGCTACAATGGATCCTTACTGCACTGTCTTTGTTGGTCGCCTCAATCACCAAACTACTGAACAAATTATCCACCAGTTTATGAGCAAATATGGTCAGATCAAGAGCTTACGCTTGGTCCGGGACATTGTTACCGGAGCTTCTCGTGGTTATGCATTTGTTGAATATGAAACTAACAGGGAGATGCGACATGCATATATGGATGCTCATCATGCAATTATTGATGATAATGAAATCATTGTTGACTATAACAGACAAAAGTTGATGCCCGGGTGGATTCCTAGAAGGCTAGGTGGTGGTCTTGGTGGCAAAAAAGAATCCGGACAACTTCGCTTTGGTGGAAGAGAAAAACCATTCCGTGCACCCTTGAAACCAATCCCGTATGAGGAGTTGGAGAAACTTGGCATCCCACCTCCACCCGAGGGAAGATACTTGTCACGCAATCAGGCCCCATCTCCCCCTCGGAGAGAAAACGGCGTTTCGGATAGGGAGGAAGGCCCTCGAAGAAGGGATTCTAAGGATAGGGACCGGGATGTTGGTGACGTCAAAAGTTCAGTGGAGAATATTGAAGAACGGCACCACAGAAGGAATTCAAGTCACCGAGATGATCACTCACGCAGAAAGAGCTCTTTGGAGAGGAGCGAAGAGAGGGATGGTCACCAACATGATAGGAGTTCATCTAAGAAAGAGCACCGACGCAGGAGTAACACTGAAATCGAGAGACATTCTCACAAGAGAAAAGAAAGAGACGAACACTCTCGTAGGCGTCGCCATTCCTCTTATGAGGACTAA 957 0.4441 METKSRKLNSIFYANSYHPIQVGSIDGTDIVPHDKAIHRAHLCQKLSLYDPHGDSKATMDPYCTVFVGRLNHQTTEQIIHQFMSKYGQIKSLRLVRDIVTGASRGYAFVEYETNREMRHAYMDAHHAIIDDNEIIVDYNRQKLMPGWIPRRLGGGLGGKKESGQLRFGGREKPFRAPLKPIPYEELEKLGIPPPPEGRYLSRNQAPSPPRRENGVSDREEGPRRRDSKDRDRDVGDVKSSVENIEERHHRRNSSHRDDHSRRKSSLERSEERDGHQHDRSSSKKEHRRRSNTEIERHSHKRKERDEHSRRRRHSSYED 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1380 318 Gene3D - 50 171 IPR012677 -
Lal22g1380 318 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 8 258 - -
Lal22g1380 318 MobiDBLite consensus disorder prediction 151 318 - -
Lal22g1380 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Lal22g1380 318 MobiDBLite consensus disorder prediction 212 302 - -
Lal22g1380 318 SUPERFAMILY RNA-binding domain, RBD 46 169 IPR035979 GO:0003676
Lal22g1380 318 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN 8 258 - -
Lal22g1380 318 SMART rrm1_1 64 137 IPR000504 GO:0003723
Lal22g1380 318 CDD RRM_snRNP35 60 149 IPR034146 -
Lal22g1380 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1380 Lal-Chr22 16692161 16697022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1380 63 138 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 6.77e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1380 K13155 - gmx:100814109 388.267