Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1363 ATGGCTTTGCAGAACATTGGTGCTGGGAATAGTGATGATGCCTTCTATAGGTACAAGATGCCTAGAATGATAACGAAAATCGAGGGTAGAGGTAATGGCATTAAAACAAATATTGTCAATATGGTTGATATTGCAAAAGCATTGGCAAGGCCAGCCGCTTACACGACCAAGTATTTCGGTTGTGAACTTGGAGCCCAATCGAAATTTGAAGAGAAGACTGGCACTTCTCATGTCAATGGAGCGCATGATACTGCAAAACTTGCAGGGCTTCTTGAGAACTTCATCAAGAAATATGTCCAATGCTATGGTTGTGGAAATCCCGAAACCGAGATCTTGATTACTAAGAGTCAAATGATCCAGCTGAAATGCGCCGCATGCGGTTTTGTTTCCGATGTGGATATGAGAGACAAGCTGACTACCTTTATCATCAAGAACCCTCCTGAAGTGAAGAAAGGAACCAAAGACAAGAAGGCTATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGCGAAGCCGCAGACGAGGAACTGAAGAAGCTGAAGAAAGAGGTTAAGAAGAAAGTCCCTTCTTCTTCGTCGAAGACTGGAACTATGAAATCTGCCTCTTCAAAGAAGAAAGGAAGCGGCTCTGATGAAGATCGCACATCGCCTACTCACAGTCAAGTTGATGACAAGGAGGTTGATCATGATGAAGATGAAGATGATGACGACGATGATGTTCAATGGCAAACCGATACATCAATAAATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCTACAAATGAACCAGAGAAAAAGAAAAAACCTTCAAGCAAAACAAGCAATGGTTCCGATAATGGTATCCCAATGGACTATAGTAAACTGGTTGACGAAGTGAAATCGAGTTTGAAGAAAGGCGTCGGTGCAAAAGAACTGCAGTCCCATCTGGCAGCACTTCCTGGATCAGCTCAAGAAAAGATGAGTGCTCTTTACGAAGCCATATTTGACGGCATCGAGAAAGGGTTTGCGAAAGAAGCAATCAAGAGGAAGAGCTACCTTGCAGCTGCTGTTGCTGATGAGGAGGGTTCACAGTCCTTATTGCTGCATGCAATTGAGGAATTTTCTGGTAACTCCAATTCCAATGCATTGAAGGAAGTGGCCTTAGTTTTGAAGGCACTCTATGATGCTGATGTGTTGGAGGAAGAATATATAGTGCAGTGGTATCAGAAAGGTGATAACAAGGAGTCTCAGATTTGGAAGAATGTTAAACCCTTTATTGATTGGCTTCAAACTGCAGAATCAGAATCAGAGGAAGAGGCTGATTCACTGAATGGGATAGAAGGAGGGCTGGCTGGCTAA 1371 0.4347 MALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNIVNMVDIAKALARPAAYTTKYFGCELGAQSKFEEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGTKDKKAMRRAEKERLKEGEAADEELKKLKKEVKKKVPSSSSKTGTMKSASSKKKGSGSDEDRTSPTHSQVDDKEVDHDEDEDDDDDDVQWQTDTSINAARQRIQEQLSAVTADMVMLSTNEPEKKKKPSSKTSNGSDNGIPMDYSKLVDEVKSSLKKGVGAKELQSHLAALPGSAQEKMSALYEAIFDGIEKGFAKEAIKRKSYLAAAVADEEGSQSLLLHAIEEFSGNSNSNALKEVALVLKALYDADVLEEEYIVQWYQKGDNKESQIWKNVKPFIDWLQTAESESEEEADSLNGIEGGLAG 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1363 456 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-LIKE 1 443 - -
Lal22g1363 456 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 443 IPR045196 GO:0003743|GO:0006413
Lal22g1363 456 MobiDBLite consensus disorder prediction 205 226 - -
Lal22g1363 456 SMART 542_3 354 439 IPR003307 GO:0005515
Lal22g1363 456 MobiDBLite consensus disorder prediction 190 204 - -
Lal22g1363 456 MobiDBLite consensus disorder prediction 271 295 - -
Lal22g1363 456 MobiDBLite consensus disorder prediction 148 189 - -
Lal22g1363 456 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Lal22g1363 456 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Lal22g1363 456 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Lal22g1363 456 MobiDBLite consensus disorder prediction 148 241 - -
Lal22g1363 456 Coils Coil 167 187 - -
Lal22g1363 456 Gene3D - 295 449 - -
Lal22g1363 456 MobiDBLite consensus disorder prediction 227 241 - -
Lal22g1363 456 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Lal22g1363 456 Gene3D - 105 145 - -
Lal22g1363 456 Gene3D - 3 104 - -
Lal22g1363 456 SUPERFAMILY ARM repeat 298 437 IPR016024 -
Lal22g1363 456 Pfam eIF4-gamma/eIF5/eIF2-epsilon 368 443 IPR003307 GO:0005515
Lal22g1363 456 CDD W2_eIF5 295 435 - -
Lal22g1363 456 ProSiteProfiles W2 domain profile. 289 443 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1363 Lal-Chr22 16569981 16571783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1363 1 436 Eukaryotic Initiation Factors Gene Family AT1G77840 62.247 2.62e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1363 K03262 - gmx:100778073 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1363 22 16569981 16571783 Lal22g1363 22 16569981 16571783 ECH
Lal18g0605 18 5206348 5211705 Lal22g1363 22 16569981 16571783 LSH