Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1355 ATGGCTAAAAGTTATGAGGGAGAAGCAATAGGAATCGACCTTGGCACTACTTACTCTTGTGTTGCAGTATGGCAAGAGCAACATTTTCGAGTCGAAATCATCCACAATGACCAAGGAAATAGAACAACACCTTCTTGTGTTGCTTTCACTAACACCCAAAGATTGATTGGTGATGCTGCTAAGAACCATGCTGCCATTAGTCCAACCAATTCTGTCTTCGATGCTAAGAGGTTAATTGGTAGGAGATTTAGTGACCCAGTTATTCAGAATGATTTGATGTTTTGGCCATTCAAGGTCATTGCTGATACTCATGACAAACCTGTGATAGTTGTTACATACAAGGGTGTAGAAAAACACTTTTCTGCTGTGGAAATTTCATCTATGGTTCTCAAAAAGATGCATGAGATTGCAGAAACCTATTTAGGGTCACCTATAAAGAATGCAGTTGTTACTGTTCCTGCATATTTCAATGATTCTCAGCGTCGAGCTACTAGAGATGCTGGTGCAATTGCTGGCCTCAATATTATGAGGATAATCAATGAACCTACTGCTGCAGCACTTGCATATGGCCTTGGAAAAAGAAGTAATTGTGTTAGAGGGTGTAATATTTTCATCTTTGATCTTGGTGGTGGTACTTTTGATGTATCTATCCTTACAATTAAGAACAATGTCTTTGAAGTTAAGGCCACTTCTGGAGACACTCACCTTGGTGGAGTGGACTTTGATAATAGAATGGTGAACCATTTTGTAGAAGAGTTGAAGTTGAAGAAAAAAGTGGACATTAGTGGAAACCCTAAAGCATTGAGGAGGTTAAGAACTGCATGTGAGAGAGCAAAAAGAACACTCTCTTTTGCTTTTGATACAACCATTGAAGTAGATGCTTTATTTCAAGGGATTGATTTTTGTTCATCAATTACTCGTGCAAAGTTTGAGCAACTCAACATGAACTATTTCATAAAATGTATGGAAACTGTTGAGAAGTGTCTTATTGATGCTAAAATGGACAAAAGTTCTATACATGACGTTGTTCTTGTTGGTGGTTCTTCTAGGATTCCAAAAGTGCAGCAACTATTACAAGACTTCTTCAATGGGAAGACTCTTTGCAATAACATAAACCCTGATGAAGCAGTTGCTTATGGTGCAGCTCTTCAGGCTGCAATGTTGAGTGGTAAAAGTAATTTTCTTCAAAACTTGGTGCTATTGGATGTTACTCCATTGTCACTAGGTATATCAATAAAAGGAGATCTCATGAGTATTTTGATTCCTAGGAATACTACTATTCCTTCAAAGAGAAAAGAATATTATTATACAACTTGTGATTACCAAACAAGGTGGTTGATTGAGGTGTATGAAGGTGAGAGGATAAGAGCTAGTGATAACAACTTGTTAGGTTTCTTCACTCTTTCTGGCTTAACTCCTGCTCTTAGAGGCCATAAAATGGTTGCATACTTTGATATTGATGCTGATGGTATCCTTAATGTGTTTGCCATGGATGAAACAAGTGGTTGCAAGAATGAGATTACCATAAATTATAACGAAGGACTACTTTCAACTCAAGAAATAAAGAGAATGATTCTAGAAGCTGAGGTATACAAAGATGAAGATAACCAATATCTGAAGAAGGCTAGAGCAATGAATGCATTAGATGATTATGTTTATAAGATGAAGAGTGCTATAAATGATGTTGAGACTAGTTCTAAGCTTAAAATGCAAGACAAGATGAAGATCACATCAGCAATTGAAAAGGCTAGAAATTTGGTTGATGGTAATTCCAAGCCAGAAATAGCTGTGATTGAAGATTATCTGAAGGAGGTAGAGGTTCTCATAAATGCAAATCATTATAACTGA 1848 0.369 MAKSYEGEAIGIDLGTTYSCVAVWQEQHFRVEIIHNDQGNRTTPSCVAFTNTQRLIGDAAKNHAAISPTNSVFDAKRLIGRRFSDPVIQNDLMFWPFKVIADTHDKPVIVVTYKGVEKHFSAVEISSMVLKKMHEIAETYLGSPIKNAVVTVPAYFNDSQRRATRDAGAIAGLNIMRIINEPTAAALAYGLGKRSNCVRGCNIFIFDLGGGTFDVSILTIKNNVFEVKATSGDTHLGGVDFDNRMVNHFVEELKLKKKVDISGNPKALRRLRTACERAKRTLSFAFDTTIEVDALFQGIDFCSSITRAKFEQLNMNYFIKCMETVEKCLIDAKMDKSSIHDVVLVGGSSRIPKVQQLLQDFFNGKTLCNNINPDEAVAYGAALQAAMLSGKSNFLQNLVLLDVTPLSLGISIKGDLMSILIPRNTTIPSKRKEYYYTTCDYQTRWLIEVYEGERIRASDNNLLGFFTLSGLTPALRGHKMVAYFDIDADGILNVFAMDETSGCKNEITINYNEGLLSTQEIKRMILEAEVYKDEDNQYLKKARAMNALDDYVYKMKSAINDVETSSKLKMQDKMKITSAIEKARNLVDGNSKPEIAVIEDYLKEVEVLINANHYN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1355 615 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 610 IPR029048 -
Lal22g1355 615 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 549 IPR029047 -
Lal22g1355 615 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 610 - -
Lal22g1355 615 PANTHER HEAT SHOCK PROTEIN 70KDA 4 610 IPR013126 GO:0005524|GO:0140662
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 8 21 - -
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 38 50 - -
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 60 68 - -
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 148 168 - -
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 211 221 - -
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 339 355 - -
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 371 391 - -
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 397 416 - -
Lal22g1355 615 PRINTS 70kDa heat shock protein signature 477 493 - -
Lal22g1355 615 Gene3D - 546 613 IPR029048 -
Lal22g1355 615 SUPERFAMILY Actin-like ATPase domain 201 390 IPR043129 -
Lal22g1355 615 Pfam Hsp70 protein 9 606 IPR013126 GO:0005524|GO:0140662
Lal22g1355 615 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lal22g1355 615 Gene3D - 194 368 - -
Lal22g1355 615 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Lal22g1355 615 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Lal22g1355 615 Gene3D - 10 386 - -
Lal22g1355 615 Gene3D Actin; Chain A, domain 4 237 320 - -
Lal22g1355 615 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Lal22g1355 615 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 545 IPR029047 -
Lal22g1355 615 Gene3D - 73 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1355 Lal-Chr22 16504041 16506063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1355 1 610 Calmodulin-binding Proteins AT3G12580 66.830 0.0 834