Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1343 ATGGTCGGTAGCGGTGGCGGTGGCAACGGCGATGATCACCACCGCAAAATGTTCTGGCGCTCCGTCTCTTGGTCAGCCTCCCGCACCGCGGCGGCCGGAAACACAACCAACAACCCTTCCGGCGAGATGGGTCATGATTTATCCGATCCAAATCCCGGCGACGGCCAGAATCGACGGTTCCCTCTGCCACCGCTGACGCCTCGGTCACAGCAGCAAAGCTCCAAGGGCCGGTCGTGCCTGCCGCCGCTCTCCATCGCTCCCCGGAGCATGGATGAGTGGCCGAAGGCGAGCTCCGACGATATCGGGGAGTGGCTGCAGCTCCCTTCCACACCTAGTGGTGGTGGTGGTGGTGGCGGGAGAGGTAATAATAGTAATAATAATAATAATGGTGGAAGATTGAAACTTGATTTGTCTTCAATTCAGAAAAATCATGATAATGGTAATAATAGTAATGGTAAGAATAATAGTGTTGGACTTGTGAAGAGGGATAAAATTGCATCTTTTGATAAGGAATGTTCAAAAGTTGCTGATCATGTTTACCTTGGTGGTGATGCTGTTGCTAAAGATAGAGATATTTTGAAACAAAATGGAATCACTCATGTTTTGAATTGTGTTGGTTTTGCATGTCCTGAGTACTTTAAAGCCGATTTTGTGTACATGACATTGTGGCTTCAGGATAGCCCTTCAGAGGATATTACTAGTATTCTCTATGATGTCTTTGATTACTTTGAGGATGTTAGGGAATTGGGTGGGAGGGTGTTTGTGCATTGTTGCCAAGGGGTGTCTAGGTCCACTTCTTTAGTCATTGCATACCGTATGTGGAGGGAAGGTCAGTGTTTCGATGATGCTTTTCAGTATGTTAAGGCGGCGAGAGGTATCGCCGATCCAAATATGGGTTTTGCTTGCCAGTTGTTACAGTGCCAGAAAAGGGTTCATGCTGTCCCTCTTAGCCCTAGCTCTTTGTTGAGGATGTATAGAATTGCCCCGCACTCGCCGTATGACCCTTTGCATCTTGTCCCTAAAATGTTGATGGATCCTTCTTCGTCTGTGCTGGACTCCAGAGGTGCATTTATTGTGCACACTCCTTCTGCGATATATGTTTGGATTGGTATGAATTGTGAGGCTATCATGGAAAGGGATGCTAGAGGGGCCGTGGGTCAGATCGTTCGCTATGAGAAAGTGCAAGGACCTATTTTAATGATTAAGGAAGGTGAAGAACCGTCTTATTTTTGGGATGCCTTTTCAAAATTCTTGCCTCTGATGGACAAATCTGGGAATGGAGTAGGAAATATCAAATCTAGTGTTAAGGTTTGGCCTGGTGAGAGGAAAGTAGGCTCATATGATCTTGATTTTGAAGTTTTCGGAAGAGCTATTAAAGGAGGTATCATGCCTCCGTTTACATCATCAGATGATGAACATGAAACCGTTCTTCCTGCTAGAGAGAGTAGCTGGAGTGTTTTAACGCGTAAAGTTTCCTCTGCTACTACAAAGGAGTTTGTCTCAGCCCCCAAGTTACCCTTTCCAAGGGTTTATTCAGATTCCATGTTGTGCATTCATACATCAACAAATTCATTTCAATCCCTGTCACCGTCATCATTGTCGTCATCCTTATCATCATCGTCTTCACCCTTTTGTGTCTCTCTAGATTCCATTTCTTCTAAATCAAACACTCATTCAAAGTTTTTGTCAGAATTGACACAAGATTCTTCCTCTGAAGTTTCCGCTTATGTTCCAGTATCTTCACCTTTGTTTAACTTTTCTAATTTGTCTCTCTCTTCAAGTTCTTCTCATCCAGTGTCTAACAGCGCAGATATCCACGGTATCAAGTTATCACATCCTCATTCTCAGTCAGCCTCTTTACCATTGAAAAAACCACCAACTTCCCTTGCCGACCGCAGAGGTAGTTTCTCAAAGTCCTTGAAGTTGCCACCGATGAATGATAATACACAGTTAACAAATAAACCGCGGACTTTTCGTGCCAGTCCAAAAGATGGAGCTCTTATGAATAGCAATTTGAGCTATTTACAACAGTTAGATAGTCCAGGCCATTTTTATGAGGACGGCCATTTCAATGATACAGGTGCGAGTTCTCGTCAACAGTGTGAGATGACATCAAGTCCGGGCAATGTTGATGGTGTGGATTACAAGGAATCTTCAAAAGAAGACTTAAAGTGCACTTCGTCAGATGGAATTGATGACAGTTGTTTACTGCAACGTAGCATGACCCAAACTTTAGTATATCACTGGCCGAGTTTAGAAAAGATTGATACATTTGGTTCAAGTCATCTGGATTCTAAAGCTGCTTTTGTCATGTTCTTTCCAAGTATGCCGACACGTGCAGGAAACGTTTTATATTTTTGGTTAGGGAGGTCTTTCGGCTGCAGTACTTCACAGGTTCAGTTAGATAGTGATAGAGAGTCAGATTTTCCAAGAGCAGTTGACTGGAATGGAATCGGTGGTGACATTCTTGCTCAGTTTAGTTTGCCAAAGAATACCATCATCAAGGAAGTTGTTACTGCTCAAGTCCATTGTAGATTGCTGATTGTACAGTGCTTTAACTCTCTCAACTTAGTCATGTATGTTCCATATATTGAAATTTCTTGCATATTAACATGTTTTTAG 2622 0.4348 MVGSGGGGNGDDHHRKMFWRSVSWSASRTAAAGNTTNNPSGEMGHDLSDPNPGDGQNRRFPLPPLTPRSQQQSSKGRSCLPPLSIAPRSMDEWPKASSDDIGEWLQLPSTPSGGGGGGGRGNNSNNNNNGGRLKLDLSSIQKNHDNGNNSNGKNNSVGLVKRDKIASFDKECSKVADHVYLGGDAVAKDRDILKQNGITHVLNCVGFACPEYFKADFVYMTLWLQDSPSEDITSILYDVFDYFEDVRELGGRVFVHCCQGVSRSTSLVIAYRMWREGQCFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAVPLSPSSLLRMYRIAPHSPYDPLHLVPKMLMDPSSSVLDSRGAFIVHTPSAIYVWIGMNCEAIMERDARGAVGQIVRYEKVQGPILMIKEGEEPSYFWDAFSKFLPLMDKSGNGVGNIKSSVKVWPGERKVGSYDLDFEVFGRAIKGGIMPPFTSSDDEHETVLPARESSWSVLTRKVSSATTKEFVSAPKLPFPRVYSDSMLCIHTSTNSFQSLSPSSLSSSLSSSSSPFCVSLDSISSKSNTHSKFLSELTQDSSSEVSAYVPVSSPLFNFSNLSLSSSSSHPVSNSADIHGIKLSHPHSQSASLPLKKPPTSLADRRGSFSKSLKLPPMNDNTQLTNKPRTFRASPKDGALMNSNLSYLQQLDSPGHFYEDGHFNDTGASSRQQCEMTSSPGNVDGVDYKESSKEDLKCTSSDGIDDSCLLQRSMTQTLVYHWPSLEKIDTFGSSHLDSKAAFVMFFPSMPTRAGNVLYFWLGRSFGCSTSQVQLDSDRESDFPRAVDWNGIGGDILAQFSLPKNTIIKEVVTAQVHCRLLIVQCFNSLNLVMYVPYIEISCILTCF 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1343 873 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 13 839 - -
Lal22g1343 873 MobiDBLite consensus disorder prediction 641 656 - -
Lal22g1343 873 Pfam Dual specificity phosphatase, catalytic domain 179 309 IPR000340 GO:0008138|GO:0016311
Lal22g1343 873 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 230 291 IPR000387 GO:0016311|GO:0016791
Lal22g1343 873 MobiDBLite consensus disorder prediction 26 134 - -
Lal22g1343 873 MobiDBLite consensus disorder prediction 26 44 - -
Lal22g1343 873 MobiDBLite consensus disorder prediction 63 79 - -
Lal22g1343 873 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 163 312 IPR029021 -
Lal22g1343 873 CDD DSP 172 306 - -
Lal22g1343 873 PANTHER MKPA PROTEIN 13 839 - -
Lal22g1343 873 Gene3D Protein tyrosine phosphatase superfamily 138 313 IPR029021 -
Lal22g1343 873 MobiDBLite consensus disorder prediction 602 656 - -
Lal22g1343 873 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Lal22g1343 873 Gene3D Severin 322 418 IPR029006 -
Lal22g1343 873 MobiDBLite consensus disorder prediction 686 714 - -
Lal22g1343 873 ProSiteProfiles Dual specificity protein phosphatase domain profile. 171 313 IPR020422 GO:0006470|GO:0008138
Lal22g1343 873 SUPERFAMILY Actin depolymerizing proteins 318 427 - -
Lal22g1343 873 SMART dsp_5 171 310 IPR020422 GO:0006470|GO:0008138
Lal22g1343 873 MobiDBLite consensus disorder prediction 116 134 - -
Lal22g1343 873 MobiDBLite consensus disorder prediction 692 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1343 Lal-Chr22 16341914 16346951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1343 1 218 Protein tyrosine phosphatase (PTP) family AT3G55270 50.667 6.15e-50 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1343 - - mtr:MTR_7g023250 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0592 18 5040695 5045927 Lal22g1343 22 16341914 16346951 LSH
Lal22g1343 22 16341914 16346951 Lal6g1675 6 19530722 19532990 LSH