Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g1342 ATGCCGTCGTCGACGACCACCTCACGCACCGTCAGGATCATCCCTCTGCAGCACCCGACGGAGACAACGTCTTCTTCTTCTTCGTCGTCGTCATCATCGCCGTTACCGTTTTCACTGTGGCTCTCGAATCTCCGTCGAATGACATGGCTCGAATGGATTGAGTTATTCTTCCCTTGCTGCCGTTGGATTCGAACGTATAAATGGAAAGAGTATTTTCAGATCGATCTCATGGCCGGTATTACCGTTGGTGTTATGCTTGTTCCTCAGTCAATGTCATATGCAAAATTAGCGGGGCTTCAACCAACATATGGACTATACTCTGGTTTTGTGCCCATATTTGTTTATGCCATATTTGGGTCTTCTCGCCAGCTTGCTGTTGGCCCAGTAGCATTGGTTTCCCTCTTGGTCTCTAATGTGCTAAGTGGCATAGCTGATCCATCCACTGAATTATACACAGAGCTGGCAATATTATTGGCTCTTATGGTTGGGATACTGGAGTGCATAATGGGGCTTTTGAGGCTAGGATGGCTGATTCGTTTCATTAGCCATTCGGTGATCTCTGGCTTTACGAGTGCTTCAGCCATTGTGATTGGTTTATCTCAAGTGAAATACTTCTTGGGGTATAATATTGACAAAAGTAGCAAGATCATACCACTGGTTAAGAGTATAATTGCTGGAGCAGATAAGTTTTCATGGCCCCCTTTTGTGATGGGATCAGTCACGCTTGCGATATTGCTTGTCATGAAGCACCTAGGGAAATCGAGGAAACACTTGCGGTTCTTGAGAGCAGCTGGTCCTCTCACAGCAGTAGTTCTGGGAACAGTTTTTGTAAATATATTTCACCCATCATCAATTTCTTTGGTGGGAGATATACCTCAGGGCCTTCCAAGATTTTCTGTTCCTAGAGCTTTCGAGTATGCACAGTCCTTAATTCCAACCGCTTTTCTCATAACTGGTGTTGCTATATTGGAATCAGTGGGAATTGCCAAGGGATTAGCAGCAAAGAATGGGTATGAGTTGGATTCAAATCAAGAGAACATAAAACTATGCAAGAACCTTGTTGGGAGCTTGTTCAGTTTCTCAATAGGCTATAAGTTGTTTGGTCTTGGTGTTTCCAATGTTCTTGGTTCATTCTTTTCAGCATACCCCACCACAGGATCCTTTTCAAGGTCAGCTGTCAACCATGAAAGTGGTGCAAAATCAGGAATATCTGGGATTGTTTCAGGAATTATAATGACCTGTGCACTGTTGTTCTTAACTCCACTATTTGAGTACATACCTCAGTGTGCTCTTGCTGCCATCGTGATCTCTGCTGTGATAGGTCTGGTAGATTATGATGTAGCCATTTTTTTGTGGCGTGTAGATAAGAAAGATTTTATTCTTTGGGCCATTACCAGCACAACTACATTATTCCTTGGTATTGAGATTGGCGTAATTGTTGGGGTTGGTGCTTCTCTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTGCTATTTTGGGTCGTTTGCCGGGAACAACTGTGTATAGAAATGTTAAACAGTATTCTGAAGCATATATGTATAATGGAATTGTAATTGTCCGTGTTGATGCTCCTATTTATTTTGCAAACACAAGTTACATAAAGGAAAGGTTGCGGGAATATGAAGTTGCTGTTGATACTTCAACAAGACGTGGACCTGAGGTTGAAAGAATTTATTTTGTTATTCTAGAGATGGCTCCCGTTACCTACATTGACTCTAGTGCTGTTCAGGCTTTGAAGGACTTGTATCAGGAATACAAATTAAGGGACATTCAGATTGCAATATCCAATCCAAGCCCAGAAGTTCTGCTTACCTTATCTAAATCTGGTCTGGTTGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATGATGCTGTTCAAGTTTGTTTGCAGCATGTCCAAAGCTTGAAAGGGGGATCTAACATTTCACAATCATCACATGCTTTATCAGAAGACAGATCAAGTTTCTATGGGCGATTACTGAAACAAGCAGGGGAGAACCTTGCAATTTCAGATTTGGAGTCTGGTAATGGCAGGTCTCCACTTTCCATGGACAAAGATCCTCACTTGGAGCCATTGTTGTCCAAAGAACATTGA 2127 0.4231 MPSSTTTSRTVRIIPLQHPTETTSSSSSSSSSSPLPFSLWLSNLRRMTWLEWIELFFPCCRWIRTYKWKEYFQIDLMAGITVGVMLVPQSMSYAKLAGLQPTYGLYSGFVPIFVYAIFGSSRQLAVGPVALVSLLVSNVLSGIADPSTELYTELAILLALMVGILECIMGLLRLGWLIRFISHSVISGFTSASAIVIGLSQVKYFLGYNIDKSSKIIPLVKSIIAGADKFSWPPFVMGSVTLAILLVMKHLGKSRKHLRFLRAAGPLTAVVLGTVFVNIFHPSSISLVGDIPQGLPRFSVPRAFEYAQSLIPTAFLITGVAILESVGIAKGLAAKNGYELDSNQENIKLCKNLVGSLFSFSIGYKLFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGISGIVSGIIMTCALLFLTPLFEYIPQCALAAIVISAVIGLVDYDVAIFLWRVDKKDFILWAITSTTTLFLGIEIGVIVGVGASLAFVIHESANPHIAILGRLPGTTVYRNVKQYSEAYMYNGIVIVRVDAPIYFANTSYIKERLREYEVAVDTSTRRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPSPEVLLTLSKSGLVELIGKEWYFVRVHDAVQVCLQHVQSLKGGSNISQSSHALSEDRSSFYGRLLKQAGENLAISDLESGNGRSPLSMDKDPHLEPLLSKEH 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g1342 708 Pfam STAS domain 516 635 IPR002645 -
Lal22g1342 708 SUPERFAMILY SpoIIaa-like 519 639 IPR036513 -
Lal22g1342 708 CDD STAS_SulP_like_sulfate_transporter 516 632 - -
Lal22g1342 708 MobiDBLite consensus disorder prediction 694 708 - -
Lal22g1342 708 ProSiteProfiles STAS domain profile. 515 639 IPR002645 -
Lal22g1342 708 Pfam Sulfate permease family 72 465 IPR011547 GO:0016021
Lal22g1342 708 Gene3D STAS domain 495 643 IPR036513 -
Lal22g1342 708 PANTHER SULFATE TRANSPORTER 4.1-RELATED 365 659 - -
Lal22g1342 708 PANTHER SULFATE TRANSPORTER 4.1-RELATED 27 359 - -
Lal22g1342 708 PANTHER SULFATE TRANSPORTER 365 659 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lal22g1342 708 PANTHER SULFATE TRANSPORTER 27 359 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lal22g1342 708 MobiDBLite consensus disorder prediction 685 708 - -
Lal22g1342 708 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g1342 Lal-Chr22 16324670 16335043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g1342 8 645 Inorganic Solute Cotransporters AT5G13550 73.668 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g1342 K18059 - gmx:100794754 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1342 22 16324670 16335043 Lal6g1671 6 19471447 19481335 LSH